View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7984_low_5 (Length: 464)
Name: NF7984_low_5
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7984_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 1049916 - 1050352
Alignment:
| Q |
16 |
catgaaatacaagcttccaccataggaaaaacttagtagccaatgaggagcaaaagcgaatccatccggaataatcataacaacgcgtttccatgacccc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1049916 |
catgaaatacaagcttccaccataggaaaaacttagtagccaatgaggagcaaaagcgaatccatccggaataatcataacaacgcgtttccatgacccc |
1050015 |
T |
|
| Q |
116 |
gtctctgaggagaaaacatataactccatctcgaacaacctttttatgaaggacttaatgatcacaactcgaaagttacgttcatttggacacggagtga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
1050016 |
gtctctgaggagaaaacatataactccatctcgaacaacctttttatgaaggacttaatgatcacaactcgaaagttacgttcatttggagaaggagtga |
1050115 |
T |
|
| Q |
216 |
tca---ccgcgcccgtaggattgctaatgaatcctaccgcaaataaactttcattacacgtcgaaggagaaggaggtatagggacacattttttcataag |
312 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1050116 |
tcaccgccgcgcccgtaggattgcaaatgaatcctaccgcgaataaactttcattacacgttgaaggagaaggaggtatagggacacattttttcataag |
1050215 |
T |
|
| Q |
313 |
tggatcgtaaacataatagtcgataccatacgtgtatcggttgttacaacacaagaataaaccgttggaacaaccgcatacacttcctttgataagcata |
412 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1050216 |
tggatcgtaaatataatagtcgataccataggtgtatcgattcttacaacacaagaataaaccgttggaacaaccgcatacgcttcctttgataagcata |
1050315 |
T |
|
| Q |
413 |
tccggacggaaagaaataggcatctctagtgacggat |
449 |
Q |
| |
|
||| ||| ||||| |||||| ||||||||||||||| |
|
|
| T |
1050316 |
tccagaccaaaagagataggcctctctagtgacggat |
1050352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 392
Target Start/End: Original strand, 42875707 - 42875795
Alignment:
| Q |
304 |
tttcataagtggatcgtaaacataatagtcgataccatacgtgtatcggttgttacaacacaagaataaaccgttggaacaaccgcata |
392 |
Q |
| |
|
||||| ||| ||||| |||||||||||| || ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42875707 |
tttcacaagcggatcataaacataatagccgctaccatatgtgtaccggttgttacaacacaagaataagccgttggaacaaccgcata |
42875795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 42875413 - 42875586
Alignment:
| Q |
16 |
catgaaatacaagcttccaccataggaaaaacttagtagccaatgaggagcaaaagcgaatccatccggaataatcataacaacgcgtttccatgacccc |
115 |
Q |
| |
|
||||||||||| |||||| || |||||||| || ||||||||||||||||||||||| || | |||||| ||||||||| | | |||||| ||| |
|
|
| T |
42875413 |
catgaaatacagctttccacagtatgaaaaactcagaagccaatgaggagcaaaagcgaagcccttcggaattttcataacaatgtgattccattgccct |
42875512 |
T |
|
| Q |
116 |
gtctctgaggagaaaacatataactccatctcgaacaacctttttatgaaggacttaatgatcacaactcgaaa |
189 |
Q |
| |
|
|||| |||||||||||||| | | |||||| ||| |||| || |||||||| ||||||||||||||||| |
|
|
| T |
42875513 |
gtctttgaggagaaaacatcaactttgatctcggacacccttactaaaaaggacttgatgatcacaactcgaaa |
42875586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 392
Target Start/End: Complemental strand, 42751229 - 42751148
Alignment:
| Q |
311 |
agtggatcgtaaacataatagtcgataccatacgtgtatcggttgttacaacacaagaataaaccgttggaacaaccgcata |
392 |
Q |
| |
|
|||||||| |||||||||||| || || || | |||| || || ||| |||||||||||||||| ||||||||||| |||| |
|
|
| T |
42751229 |
agtggatcataaacataatagacggtagcacatgtgtcccgattcttagaacacaagaataaaccattggaacaaccacata |
42751148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University