View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7984_low_6 (Length: 446)

Name: NF7984_low_6
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7984_low_6
NF7984_low_6
[»] chr5 (2 HSPs)
chr5 (19-433)||(34672000-34672414)
chr5 (320-406)||(8723071-8723157)
[»] chr8 (2 HSPs)
chr8 (149-405)||(7174464-7174720)
chr8 (131-405)||(45383345-45383620)
[»] chr4 (2 HSPs)
chr4 (303-433)||(17202425-17202555)
chr4 (164-227)||(17456534-17456597)
[»] chr6 (2 HSPs)
chr6 (194-433)||(1510581-1510820)
chr6 (322-393)||(26905897-26905968)
[»] chr3 (2 HSPs)
chr3 (320-406)||(15788404-15788490)
chr3 (320-429)||(8969991-8970100)
[»] chr1 (2 HSPs)
chr1 (323-405)||(38534311-38534393)
chr1 (323-405)||(38556529-38556611)
[»] chr7 (3 HSPs)
chr7 (322-405)||(5612516-5612599)
chr7 (323-429)||(21503384-21503490)
chr7 (322-426)||(13016666-13016770)
[»] chr2 (1 HSPs)
chr2 (322-405)||(34072968-34073051)


Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 433
Target Start/End: Complemental strand, 34672414 - 34672000
Alignment:
Q  19 aaagcttgggttgtggcccaatttcgcccccaaatagtcgctctagggaaagtatcgagccttgaataaattcgaaaccaaacattcactttgaaattgt 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||     
T  34672414 aaagcttaggttgtggcccaatttcgcccccaaatagtcgctctggggaaaatatcgagccttgaataatttcgaaaccaaacattcactttgaaattga 34672315  T
Q  119 aacttacaaccctgcttacctaacattgccagattaaacgacgtaaaatccttgaaccccatacctccatgatttttatgaactgtaagcttatcccaag 218  Q
    ||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||  ||||    
T  34672314 aacttccaaccctgcttacctaacattgccagattaaacgccgtcaaatccttgaaccccatacctccatgatttttatgaactctaagcttattacaag 34672215  T
Q  219 atagccaatgaattcttcttctactactccctccattcccccaccaaatgccgtttatcattttttctatttcgtctacaagtgtggtaggaagcaggaa 318  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  34672214 atagccaatgaattcctcttctgttactccctccattcccccaccaaaagccatttatcattttttctatttggtctacaagtgtggtaggaagaaggaa 34672115  T
Q  319 cacactcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactccaggcattaatcttt 418  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||    
T  34672114 cacactcataacatatgaagatattgcttgcagcacagattctatcatcacctatctttcggctttcgacaagcatttactactctaggcattaatcttt 34672015  T
Q  419 ttccacactctgtct 433  Q
    | |||||||||||||    
T  34672014 tgccacactctgtct 34672000  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 8723157 - 8723071
Alignment:
Q  320 acactcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactccag 406  Q
    |||||||||||||| ||||| || ||||| || |||||||| ||||| || |  ||||| ||||| || ||||||||||||||||||    
T  8723157 acactcataacatacgaagggatagcttggaggacagatttaatcataactttccttcctgctttggataagcatttactactccag 8723071  T

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Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 149 - 405
Target Start/End: Complemental strand, 7174720 - 7174464
Alignment:
Q  149 agattaaacgacgtaaaatccttgaaccccatacctccatgatttttatgaactgtaagcttatcccaagatagccaatgaattcttcttctactactcc 248  Q
    ||||||||||  || |||||||| |||||||| || ||||  ||||| || || ||||||||||||||||||||||||||||||| | |||| ||||| |    
T  7174720 agattaaacgctgtcaaatccttaaaccccatgcccccatagtttttgtgcacagtaagcttatcccaagatagccaatgaattccttttctcctactac 7174621  T
Q  249 ctccattcccccaccaaatgccgtttatcattttttctatttcgtctacaagtgtggtaggaagcaggaacacactcataacatatgaaggtattgcttg 348  Q
    |||| |  |||||||| | ||| |||| ||| ||||| |||||||| || || |||||||||||||  |||||||||||||  |||||||| ||| | ||    
T  7174620 ctccgtgtccccaccagaagccatttaccatcttttcaatttcgtccaccagagtggtaggaagcaaaaacacactcataatgtatgaaggaattacctg 7174521  T
Q  349 cagcacagattttatcatcacctctcttccggctttcgacaagcatttactactcca 405  Q
     |  |||||||||||||| |||||||  |||||||| || |||||||  ||||||||    
T  7174520 taagacagattttatcattacctctcgcccggcttttgataagcattggctactcca 7174464  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 131 - 405
Target Start/End: Original strand, 45383345 - 45383620
Alignment:
Q  131 tgcttacctaacattgccagattaaacgacgtaaaatccttgaaccccatacctccatgatttttatgaactgtaagcttatcccaagatagccaatgaa 230  Q
    ||||| |||| |||||||| ||| || | ||| ||||| ||||| ||||| || |||   |||||||||||  | || ||||||||||||||||||||||    
T  45383345 tgctttcctagcattgccaaattgaaagccgtcaaatctttgaagcccatcccgccaaattttttatgaacaatgagtttatcccaagatagccaatgaa 45383444  T
Q  231 ttcttcttctactactccctccattcccccaccaaatgccgtttatcatttttt-ctatttcgtctacaagtgtggtaggaagcaggaacacactcataa 329  Q
    | | |||  || |  | || ||||| |||||||||| | | ||||||||||||| | || ||||| ||||| || ||||| ||||  || |  |||||||    
T  45383445 tacctctattattgtttccaccatttccccaccaaaaggcatttatcatttttttcaatctcgtcaacaagagtagtaggcagcaaaaatatgctcataa 45383544  T
Q  330 catatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactcca 405  Q
    |||| |||||||| ||||| ||  ||||||||||||| |||||||| | |||||| ||| ||||||| ||||||||    
T  45383545 catacgaaggtatggcttgtagagcagattttatcattacctctctgctggctttagacgagcatttgctactcca 45383620  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 303 - 433
Target Start/End: Original strand, 17202425 - 17202555
Alignment:
Q  303 tggtaggaagcaggaacacactcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactact 402  Q
    ||||||| |||| |||||||||||| ||||||||||  |||| ||||| ||||||||||| ||| ||||||||||| |||| | |||| ||||| || ||    
T  17202425 tggtagggagcaagaacacactcatgacatatgaagagattgtttgcaacacagattttagcataacctctcttccagcttgcaacaaacatttgctgct 17202524  T
Q  403 ccaggcattaatctttttccacactctgtct 433  Q
     |||| ||||||||||| ||||||| |||||    
T  17202525 tcaggaattaatcttttgccacactgtgtct 17202555  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 17456597 - 17456534
Alignment:
Q  164 aaatccttgaaccccatacctccatgatttttatgaactgtaagcttatcccaagatagccaat 227  Q
    ||||||||||| ||||||||||||| |||||||||||| | ||| || |||||||| |||||||    
T  17456597 aaatccttgaagcccatacctccatcatttttatgaacagaaagtttttcccaagaaagccaat 17456534  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 433
Target Start/End: Complemental strand, 1510820 - 1510581
Alignment:
Q  194 ttatgaactgtaagcttatcccaagatagccaatgaattcttcttctactactccctccattcccccaccaaatgccgtttatcattttttctatttcgt 293  Q
    |||||||| || |||||||||||||| ||||| ||||| | ||| |||||||| |||||||| |||||||| | ||| || || ||||| || ||    |    
T  1510820 ttatgaaccgtgagcttatcccaagaaagccagtgaatgcctctgctactactacctccatttccccaccagaagccattgataattttctcaatagaat 1510721  T
Q  294 ctacaagtgtggtaggaagcaggaacacactcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagca 393  Q
    | | |||  | | ||| |  | ||| | |||||| ||||| || || || ||||||||||||||||| ||||||||||| || || ||||||||||| ||    
T  1510720 caataaggtttgaaggcaataagaaaatactcatgacataagatggaatcgcttgcagcacagatttaatcatcacctccctaccagctttcgacaaaca 1510621  T
Q  394 tttactactccaggcattaatctttttccacactctgtct 433  Q
    ||| |||||||| | | ||||||||| |||||||||||||    
T  1510620 tttgctactccacgaactaatcttttgccacactctgtct 1510581  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 393
Target Start/End: Complemental strand, 26905968 - 26905897
Alignment:
Q  322 actcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagca 393  Q
    |||||||||||| ||||| ||||| ||||| |||||||||||||| ||||| |  || ||||| ||||||||    
T  26905968 actcataacataagaaggaattgcctgcagaacagattttatcataacctcgcgccctgctttagacaagca 26905897  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 15788490 - 15788404
Alignment:
Q  320 acactcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactccag 406  Q
    |||||||||||||||||||| || ||||| || |||||||| ||||| || || ||||| ||||| || ||||||||||||||||||    
T  15788490 acactcataacatatgaaggaatagcttggaggacagatttaatcataacttcccttcctgctttggataagcatttactactccag 15788404  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 429
Target Start/End: Original strand, 8969991 - 8970100
Alignment:
Q  320 acactcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactccaggcattaatctttt 419  Q
    |||||||||||||| || || || | ||| || |||||||| ||||| ||||| ||||| ||||| ||||| |||||||| ||||||  | ||||||| |    
T  8969991 acactcataacataggatggaatagattgaagaacagatttgatcatgacctcccttcctgctttagacaaacatttactgctccagctactaatcttct 8970090  T
Q  420 tccacactct 429  Q
     |||||||||    
T  8970091 gccacactct 8970100  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 405
Target Start/End: Original strand, 38534311 - 38534393
Alignment:
Q  323 ctcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactcca 405  Q
    ||||||||||| ||||| || ||||| |||||| |||| ||||| |||||||  || ||||| ||||| ||||||||||||||    
T  38534311 ctcataacataggaaggaatagcttgaagcacatatttgatcatgacctctcgacctgctttggacaaacatttactactcca 38534393  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 405
Target Start/End: Original strand, 38556529 - 38556611
Alignment:
Q  323 ctcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactcca 405  Q
    ||||||||||| ||||| || ||||| |||||| |||| ||||| |||||||  || ||||| ||||| ||||||||||||||    
T  38556529 ctcataacataggaaggaatagcttgaagcacatatttgatcatgacctctcgacctgctttggacaaacatttactactcca 38556611  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 405
Target Start/End: Original strand, 5612516 - 5612599
Alignment:
Q  322 actcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactcca 405  Q
    |||||||| ||| || || || ||||| || |||||||| ||||| |||||||| || ||||| ||||| ||||||||||||||    
T  5612516 actcataatataagatggaatagcttgaagaacagatttgatcataacctctctacctgctttggacaaacatttactactcca 5612599  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 429
Target Start/End: Complemental strand, 21503490 - 21503384
Alignment:
Q  323 ctcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactccaggcattaatctttttcc 422  Q
    ||||||| |||||  || |||| ||| || ||| ||||||||| ||| |||| ||| ||||| || |  |||||||||||||| | ||||||||||||||    
T  21503490 ctcataaaatatgttgggattgattgaaggacatattttatcaacacttctcgtccagctttagagagacatttactactccacgaattaatctttttcc 21503391  T
Q  423 acactct 429  Q
    | |||||    
T  21503390 aaactct 21503384  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 426
Target Start/End: Original strand, 13016666 - 13016770
Alignment:
Q  322 actcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactccaggcattaatctttttc 421  Q
    |||||||||||| ||||| ||||| ||||  |||||||||||||| ||||| |  ||  |||| |||||||| || | |||||| | |||||| || |||    
T  13016666 actcataacataagaaggaattgcctgcaaaacagattttatcataacctcgcgacctactttagacaagcactttccactccaagaattaattttgttc 13016765  T
Q  422 cacac 426  Q
    |||||    
T  13016766 cacac 13016770  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 405
Target Start/End: Original strand, 34072968 - 34073051
Alignment:
Q  322 actcataacatatgaaggtattgcttgcagcacagattttatcatcacctctcttccggctttcgacaagcatttactactcca 405  Q
    |||||| |||||||| || || ||||| || ||| |||| ||||| |||||||| || ||||| ||||| ||||||||||||||    
T  34072968 actcatgacatatgatggaatagcttgaagaacatatttgatcatgacctctctacctgctttggacaaacatttactactcca 34073051  T

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