View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7984_low_7 (Length: 445)
Name: NF7984_low_7
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7984_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 21 - 430
Target Start/End: Original strand, 6069404 - 6069813
Alignment:
| Q |
21 |
cctggttcacaagtatcaacactggtataattgtagctgtgaacggccacacgaagtcttcttacagacacattttgaaacacagcactcatcattgtta |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6069404 |
cctggttcacaagtatcaacactggtataattgtagctgtgaacggccacacgaagtcttcttacagacacattttgaaacacagcactcatcattgtta |
6069503 |
T |
|
| Q |
121 |
aattgagacttttcattataaggctaagtgaatgtccatccaaattcaagctgttactgaatgaaatgtgtttggtttttcccatcatctttgttgctaa |
220 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6069504 |
aattgagacttttcattataagggtaagtgaatgtccatccaaattcaagctgttactgaatgaaatgtgtttggtttttcccatcatctttgttgctaa |
6069603 |
T |
|
| Q |
221 |
attttttagacttgacactgaaatgagtgacgtgcagttaactgcatttaacactgtgatgagaggtggaagctctggtatgcactcaagctccctgcaa |
320 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6069604 |
tttttttagatttgacactgaaattagtgatgtgcagtttactgcatttaacattgtgatgagaggtggaagctctggtatgcactcaagctccctgcaa |
6069703 |
T |
|
| Q |
321 |
ttcaccaaagacaaaatttccaattcttcaagatttttaatgctttcaggcaacctcttcatgttgcttccatcaaggtttaattcaattaactttgata |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6069704 |
ttcaccaaagacaaaatttccaattcttcaagctttttaatgctttcaggcaacctcttcatgttgcttccatcaaggtttaattccattaactttgata |
6069803 |
T |
|
| Q |
421 |
caacgtcgat |
430 |
Q |
| |
|
|||||||||| |
|
|
| T |
6069804 |
caacgtcgat |
6069813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 29 - 426
Target Start/End: Original strand, 6193798 - 6194195
Alignment:
| Q |
29 |
acaagtatcaacactggtataattgtagctgtgaacggccacacgaagtcttcttacagacacattttgaaacacagcactcatcattgttaaattgaga |
128 |
Q |
| |
|
||||| |||||||||| |||| ||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6193798 |
acaagcatcaacactgttatagttgtagctgcggacggccacacggagtcttcttacagacacattatgaaacacagcactcatcattgttaaattgaga |
6193897 |
T |
|
| Q |
129 |
cttttcattataaggctaagtgaatgtccatccaaattcaagctgttactgaatgaaatgtgtttggtttttcccatcatctttgttgctaaatttttta |
228 |
Q |
| |
|
|||| ||||||||| | |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
6193898 |
ctttccattataagtccaagtgaatgtccgtccaaattcaagctgttgctgaatgaaatatgtttggtttttccgatcatctttgttgctaattttttta |
6193997 |
T |
|
| Q |
229 |
gacttgacactgaaatgagtgacgtgcagttaactgcatttaacactgtgatgagaggtggaagctctggtatgcactcaagctccctgcaattcaccaa |
328 |
Q |
| |
|
|| |||||||||||| || || |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6193998 |
gatttgacactgaaaccagcgatgtgcagttaactgcatttaacagtgtgattagaggtggaagctctggtatgcactcaagcttcctgcaattcaccaa |
6194097 |
T |
|
| Q |
329 |
agacaaaatttccaattcttcaagatttttaatgctttcaggcaacctcttcatgttgcttccatcaaggtttaattcaattaactttgatacaacgt |
426 |
Q |
| |
|
|||||||||||||| ||||||||| || |||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
6194098 |
agacaaaatttccagttcttcaagtttcttaatgctttgaggcaacattttcatgttgcttccatcaaggtttaattccattaactttgatgcaacgt |
6194195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 29 - 426
Target Start/End: Complemental strand, 37453176 - 37452779
Alignment:
| Q |
29 |
acaagtatcaacactggtataattgtagctgtgaacggccacacgaagtcttcttacagacacattttgaaacacagcactcatcattgttaaattgaga |
128 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37453176 |
acaagcatcaacactgttatagttgtagctgtgaactttcacacggagtcttcttacagacacattttgaaacacagcactcatcattgttaaattgaga |
37453077 |
T |
|
| Q |
129 |
cttttcattataaggctaagtgaatgtccatccaaattcaagctgttactgaatgaaatgtgtttggtttttcccatcatctttgttgctaaatttttta |
228 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
37453076 |
ttttccattataaggctgagtgaatgtccatccaaattcaagctgttactgaatgaaatgtgtttggtttttcccatcatcattgttgctaatcctttta |
37452977 |
T |
|
| Q |
229 |
gacttgacactgaaatgagtgacgtgcagttaactgcatttaacactgtgatgagaggtggaagctctggtatgcactcaagctccctgcaattcaccaa |
328 |
Q |
| |
|
|| |||||||||||| || || |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37452976 |
gatttgacactgaaaccagggatgtgcagttcactgcatttaacagtgtgacgagaggtggaagctctggtatgcactcaagctccctgcaattcaccaa |
37452877 |
T |
|
| Q |
329 |
agacaaaatttccaattcttcaagatttttaatgctttcaggcaacctcttcatgttgcttccatcaaggtttaattcaattaactttgatacaacgt |
426 |
Q |
| |
|
||| | |||||||| ||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
37452876 |
agaaagaatttccagttcttcaagtttcttaatgctttcaggcaaccttttcatgttgctcccatcaaggtttaattcctttaactttgatagaacgt |
37452779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University