View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7984_low_8 (Length: 438)
Name: NF7984_low_8
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7984_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 19 - 419
Target Start/End: Complemental strand, 56402163 - 56401763
Alignment:
| Q |
19 |
gatctaagtctcacttctgtgttgggaggcattcgctacaaaatatgaattctccaaagaaagcttatcatacaaattatgcaggcaagaggcataaaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56402163 |
gatctaagtctcacttctgtgttgggaggcattcgctacaaaatatgaattctccaaataaagcttatcatacaaattatgcaggcaagaggcataaaag |
56402064 |
T |
|
| Q |
119 |
cttaacagtgttcagtgtgcaataacatgaaattacatctaaaacgcataaaaacattatctaaagacacaaggatcaaagttctcttttccccttgaac |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56402063 |
cttaacagagttcagtgtgcaataacatgaaattacatctaaaacgcataaaaacattatctaaagacacaaggatcaaagttctcttttccccttgaac |
56401964 |
T |
|
| Q |
219 |
aaagcatatttttcagctgcaactaagaagtatcaaaaggatgaaaattataaaagaaacattcaacggtcttgtaggtatactagccagtggccaatac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
56401963 |
aaagcatatttttcagctgcaactaagaagtatcaaaatgatgaaaattataaaagaaacattcaagggtcttgtaggtatactagccagtggccaatac |
56401864 |
T |
|
| Q |
319 |
aactcattcacatcatataatacttgatggttctactttatagtatgatcttagagcacaaaaacacaggtaaagaggacccaaattcaataaaatcaac |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56401863 |
aactcattcacatcatataatacttgatggttctactttatagtatgatctcagagcacaaaaacacaggtaaagaggacccaaattcaataaaatcaac |
56401764 |
T |
|
| Q |
419 |
t |
419 |
Q |
| |
|
| |
|
|
| T |
56401763 |
t |
56401763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 11319332 - 11319416
Alignment:
| Q |
193 |
atcaaagttctcttttccccttgaacaaagcatatttttcagctgcaactaagaagtatcaaaaggatgaaaattataaaagaaac |
278 |
Q |
| |
|
|||| |||||| ||||||| | |||||||||||| ||||||||||||||||||| ||||||| || ||||| |||| ||||||| |
|
|
| T |
11319332 |
atcagagttctattttcccat-gaacaaagcatacatttcagctgcaactaagaaacatcaaaatgaagaaaactatagaagaaac |
11319416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 11477353 - 11477437
Alignment:
| Q |
193 |
atcaaagttctcttttccccttgaacaaagcatatttttcagctgcaactaagaagtatcaaaaggatgaaaattataaaagaaac |
278 |
Q |
| |
|
|||| |||||| ||||||| | |||||||||||| ||||||||||||||||||| ||||||| || ||||| |||| ||||||| |
|
|
| T |
11477353 |
atcagagttctattttcccat-gaacaaagcatacatttcagctgcaactaagaaacatcaaaatgaagaaaactatagaagaaac |
11477437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University