View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7984_low_9 (Length: 425)

Name: NF7984_low_9
Description: NF7984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7984_low_9
NF7984_low_9
[»] chr8 (1 HSPs)
chr8 (1-403)||(32525748-32526146)
[»] chr1 (8 HSPs)
chr1 (1-403)||(6838433-6838831)
chr1 (1-300)||(2797341-2797636)
chr1 (148-403)||(8977180-8977425)
chr1 (1-134)||(8977475-8977608)
chr1 (154-403)||(6385041-6385283)
chr1 (148-375)||(28600273-28600495)
chr1 (16-134)||(6384863-6384981)
chr1 (242-316)||(49211846-49211920)
[»] chr5 (2 HSPs)
chr5 (142-403)||(20082962-20083217)
chr5 (50-135)||(20083260-20083345)
[»] chr3 (2 HSPs)
chr3 (148-403)||(2802958-2803206)
chr3 (20-108)||(2802795-2802883)
[»] chr2 (1 HSPs)
chr2 (156-212)||(13812434-13812490)
[»] chr7 (1 HSPs)
chr7 (242-316)||(35939940-35940014)
[»] chr4 (1 HSPs)
chr4 (242-316)||(25429282-25429356)


Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 32525748 - 32526146
Alignment:
Q  1 atcactactttggaaaataccaaagatttctcaaaaatcgctttggcagaattgcttaatgcattgaaggcacaagaacagaggagattgacgagagagg 100  Q
    |||||||||||||| |||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32525748 atcactactttggagaataccaaagatttctcaaaaatttcttttgcagaattgcttaatgcattgaaggcacaagaacagaggagattgatgagagagg 32525847  T
Q  101 aaacaacacttgaaggagcattagcagccaagcagtagaatgtgggttcaacatcagccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcc 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32525848 aaacaacacttgaaggagcattagcagccaagcagcagaatgtgggttcaacatcagccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcc 32525947  T
Q  201 tccatgtcaacactgtggaaagaaaggtcatccacgtgccctttagatgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatga 300  Q
    |||||||||||||| |||||||||||||||||||    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32525948 tccatgtcaacactatggaaagaaaggtcatcca----cccttaagatgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatga 32526043  T
Q  301 agctgttatttgtaaaaataggaatcaacaacataatgatgaggcaaaggttgttgatcaagaggaagaggaggatcacttattcgttgcaacatgtttc 400  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32526044 agctgatatttgtaaaaataggaatcaacaacataatgatgaggcaaaggttgttgatcaagaggaagaggaggatcacttattcgttgcaacatgtttc 32526143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 6838831 - 6838433
Alignment:
Q  1 atcactactttggaaaataccaaagatttctcaaaaatcgctttggcagaattgcttaatgcattgaaggcacaagaacagaggagattgacgagagagg 100  Q
    |||||||||||||| |||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  6838831 atcactactttggagaataccaaagatttctcaaaaatttcttttgcagaattgcttaatgcattgaaggcacaagaacagagaagattgatgagagagg 6838732  T
Q  101 aaacaacacttgaaggagcattagcagccaagcagtagaatgtgggttcaacatcagccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcc 200  Q
    |||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6838731 aaacaacacttgaaggagcattagcagccatgtagcagaatgtgggttcaacatcagccaatgcaacagaaaagaatgcaattcgaagaaaatcttatcc 6838632  T
Q  201 tccatgtcaacactgtggaaagaaaggtcatccacgtgccctttagatgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatga 300  Q
    |||| |||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6838631 tccacgtcaacactgtggaaagaaaggtcatcca----ccctttagatgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatga 6838536  T
Q  301 agctgttatttgtaaaaataggaatcaacaacataatgatgaggcaaaggttgttgatcaagaggaagaggaggatcacttattcgttgcaacatgtttc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6838535 agctgttatttgtaaaaataggaatcaacaacataatgatgaggcaaaggttgttgatcaagaggaagaggaggatcacttattcgttgcaacatgtttc 6838436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 2797636 - 2797341
Alignment:
Q  1 atcactactttggaaaataccaaagatttctcaaaaatcgctttggcagaattgcttaatgcattgaaggcacaagaacagaggagattgacgagagagg 100  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  2797636 atcactactttggagaataccaaagatttctcaaaaatttctttggcagaattgcttaatgcattgaaggcactagaacagagaagattgatgagagagg 2797537  T
Q  101 aaacaacacttgaaggagcattagcagccaagcagtagaatgtgggttcaacatcagccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcc 200  Q
    ||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2797536 aaacaacacttgaaggagcattagcagccaagcagcataatgtgggctcaacatcagccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcc 2797437  T
Q  201 tccatgtcaacactgtggaaagaaaggtcatccacgtgccctttagatgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatga 300  Q
    ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2797436 tccatgtcaacactgtggaaagaaaggtcatcca----ccctttagatgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatga 2797341  T

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Target: chr1; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 148 - 403
Target Start/End: Complemental strand, 8977425 - 8977180
Alignment:
Q  148 tcaacatcagccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaaggtcatccacgtgccctttaga 247  Q
    |||| |||||||||||||||||||||||||| ||||| ||||||||||||| | |||| |||||| |||||||| |||||||||||||    ||||||||    
T  8977425 tcaaaatcagccaatgcaacagaaaagaatgaaattcaaagaaaatcttatacgccatttcaacattgtggaaaaaaaggtcatccac----cctttaga 8977330  T
Q  248 tgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatgaagctgttatttgtaaaaataggaatcaacaacataatgatgaggcaa 347  Q
    |||||||||||||||||||||||||| ||      |||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||    
T  8977329 tgttggagaagacctgatgctaagtgcac------taatcaaatggggcatgaagttgttatttgtaaaaataggaatcaacaagatattgatgaggcaa 8977236  T
Q  348 aggttgttgatcaagaggaagaggaggatcacttattcgttgcaacatgtttctct 403  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  8977235 aggttgttgatcaaaaggaagatgaggatcacttattcgttgcaacatgtttctct 8977180  T

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Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 8977608 - 8977475
Alignment:
Q  1 atcactactttggaaaataccaaagatttctcaaaaatcgctttggcagaattgcttaatgcattgaaggcacaagaacagaggagattgacgagagagg 100  Q
    ||||||||||| || ||||||| |||||||| |||||   ||||||||||||||||||||||||||||||  |||||||| || ||||||| || ||| |    
T  8977608 atcactactttagagaataccagagatttctaaaaaaaatctttggcagaattgcttaatgcattgaaggggcaagaacatagaagattgatgaaagaag 8977509  T
Q  101 aaacaacacttgaaggagcattagcagccaagca 134  Q
    ||||||||||||||||||||||||||||||||||    
T  8977508 aaacaacacttgaaggagcattagcagccaagca 8977475  T

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Target: chr1; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 154 - 403
Target Start/End: Original strand, 6385041 - 6385283
Alignment:
Q  154 tcagccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaaggtcatccacgtgccctttagatgttgg 253  Q
    |||||||||| || |||||| |||| |||||||||||||||||  | ||| |||| ||||||  ||||||||||||| ||||    | |||||| |||||    
T  6385041 tcagccaatgtaaaagaaaataatgaaattcgaagaaaatcttcacttccttgtctacactg--gaaagaaaggtcacccac----catttagaggttgg 6385134  T
Q  254 agaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatgaagctgttatttgtaaaaataggaatcaacaacataatgatgaggcaaaggttg 353  Q
    ||||||||||||| |||| | ||||||||||||||||| |||||||||||| |||  ||| |||||| ||||||||||| || |||  ||| |||| ||     
T  6385135 agaagacctgatgttaagcgcaccaagtgtaatcaaatagggcatgaagctattacatgtgaaaataagaatcaacaacgtagtga-caggaaaagatta 6385233  T
Q  354 ttgatcaagaggaagaggaggatcacttattcgttgcaacatgtttctct 403  Q
    |||| ||||| |||||| ||| | |||| ||| |||| ||||||||||||    
T  6385234 ttgaacaagaagaagagaagggtgacttgttcattgcgacatgtttctct 6385283  T

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Target: chr1; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 148 - 375
Target Start/End: Complemental strand, 28600495 - 28600273
Alignment:
Q  148 tcaacatcagccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaaggtcatccacgtgccctttaga 247  Q
    ||||||||||| || |||| ||||||||||| |||| |||||||||||||||| || |  ||| | |||||||||||| ||||||||     | |||| |    
T  28600495 tcaacatcagcgaaagcaaaagaaaagaatgaaatttgaagaaaatcttatccacctttccaatattgtggaaagaaatgtcatcca----tcatttaaa 28600400  T
Q  248 tgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatgaagctgttatttgtaaaaataggaatcaacaacataatgatgaggcaa 347  Q
    |||||||||| ||   |||||||||| || | || || ||||||| | ||||||||| |||| | | | ||||||||||||||||||| |||||||||||    
T  28600399 tgttggagaaaacgaaatgctaagtgcactatgtctagtcaaatgagacatgaagctcttatatttcagaataggaatcaacaacatagtgatgaggcaa 28600300  T
Q  348 aggttgttgatcaagaggaagaggagga 375  Q
      | || ||||||||| |||||||||||    
T  28600299 gtgatg-tgatcaagaagaagaggagga 28600273  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 6384863 - 6384981
Alignment:
Q  16 aataccaaagatttctcaaaaatcgctttggcagaattgcttaatgcattgaaggcacaagaacagaggagattgacgagagaggaaacaacacttgaag 115  Q
    ||||||||  ||||||||||||   ||||| || ||| |||||||||||||||| |||||||| |||  |||   | ||||||||||||||||   ||||    
T  6384863 aataccaagaatttctcaaaaagttctttgacaaaatagcttaatgcattgaagacacaagaatagataagacgtatgagagaggaaacaacatgagaag 6384962  T
Q  116 gagcattagcagccaagca 134  Q
     ||| |||||| |||||||    
T  6384963 cagctttagcaaccaagca 6384981  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 49211846 - 49211920
Alignment:
Q  242 tttagatgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatgaagctgttatttgtaaa 316  Q
    |||| |||||||||||| || ||||| ||||| | |||||| ||| ||||||| ||||||| ||| |||||||||    
T  49211846 tttaaatgttggagaaggccagatgcaaagtgcaacaagtgcaatgaaatgggtcatgaagatgtgatttgtaaa 49211920  T

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Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 142 - 403
Target Start/End: Complemental strand, 20083217 - 20082962
Alignment:
Q  142 gtgggttcaacatcagccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaaggtcatccacgtgccc 241  Q
    ||||| || |||||||||| | ||| ||||||||||| |||||||||||| | | ||||||| ||| ||||||| || ||||||||| || |||    ||    
T  20083217 gtgggatcgacatcagccactacaagagaaaagaatgaaattcgaagaaattgt-atcctccctgttaacactgagggaagaaaggtaattcac----cc 20083123  T
Q  242 tttagatgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatgaagctgttatttgtaaaaataggaatcaacaacataatgatg 341  Q
    |||||||||||| || ||| | ||||||||||||| |||||||| |||||| || |||||||| |||||||||||||| | |||||||||| || |||||    
T  20083122 tttagatgttggggatgacataatgctaagtgtactaagtgtaaccaaatgaggaatgaagctattatttgtaaaaat-gaaatcaacaacttagtgatg 20083024  T
Q  342 aggcaaaggttgttgatcaagaggaagaggaggatcacttattcgttgcaacatgtttctct 403  Q
    | ||||| |||||| || |||| |||||||||||||||||||| ||||||| ||||||||||    
T  20083023 acgcaaatgttgttaatgaagaagaagaggaggatcacttatttgttgcaagatgtttctct 20082962  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 20083345 - 20083260
Alignment:
Q  50 aattgcttaatgcattgaaggcacaagaacagaggagattgacgagagaggaaacaacacttgaaggagcattagcagccaagcag 135  Q
    ||||||||| |||||| ||||| |||||| |||| ||||| | |||||||||||||||| ||||||||||||||||| ||||||||    
T  20083345 aattgcttattgcattaaaggcgcaagaagagagaagattaatgagagaggaaacaacatttgaaggagcattagcatccaagcag 20083260  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 148 - 403
Target Start/End: Original strand, 2802958 - 2803206
Alignment:
Q  148 tcaacatcagccaatgcaacaga-aaagaatgtaattcgaagaaaatcttatcctccatgtcaacactgtggaaagaaaggtcatccacgtgccctttag 246  Q
    ||||||||||||||||||| | | |||||||| ||||||| ||||||||||||| || |||||||| |||||||||||||||||| ||    || ||||     
T  2802958 tcaacatcagccaatgcaaaacataaagaatgaaattcgatgaaaatcttatccaccttgtcaacattgtggaaagaaaggtcattca----ccatttat 2803053  T
Q  247 atgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatgaagctgttatttgtaa-aaataggaatcaacaacataatgatgaggc 345  Q
    | | |||||||||||||||||||||||  |   ||||||||||||||| | ||||| |||||| ||||| ||| | |||||||||| ||| ||||| |||    
T  2803054 agggtggagaagacctgatgctaagtg--cattgtgtaatcaaatgggacgtgaagttgttatatgtaagaaaaaagaatcaacaaaatagtgatggggc 2803151  T
Q  346 aaaggttgttgatcaagaggaagaggaggatcacttattcgttgcaacatgtttctct 403  Q
    ||||| ||||| |||||||   ||||||||| |||| || ||| ||||||||||||||    
T  2803152 aaaggatgttggtcaagag---gaggaggattacttgtttgttacaacatgtttctct 2803206  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 2802795 - 2802883
Alignment:
Q  20 ccaaagatttctcaaaaatcgctttggcagaattgcttaatgcattgaaggcacaagaacagaggagattgacgagagaggaaacaaca 108  Q
    |||| ||||||||||||||  |||||| |||||||||||||||||||||||| ||||||||  | ||||||| ||||||||| ||||||    
T  2802795 ccaaggatttctcaaaaatttctttggtagaattgcttaatgcattgaaggcgcaagaacatggaagattgatgagagaggacacaaca 2802883  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 212
Target Start/End: Original strand, 13812434 - 13812490
Alignment:
Q  156 agccaatgcaacagaaaagaatgtaattcgaagaaaatcttatcctccatgtcaaca 212  Q
    ||||||||||| ||||||||||| ||||| || |||||||||||| || ||||||||    
T  13812434 agccaatgcaaaagaaaagaatgaaattcaaaaaaaatcttatccgccttgtcaaca 13812490  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 35939940 - 35940014
Alignment:
Q  242 tttagatgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatgaagctgttatttgtaaa 316  Q
    |||| |||||||||||| || ||||| ||||| | |||||| ||| ||||||| ||||||| ||| |||||||||    
T  35939940 tttaaatgttggagaaggccagatgcaaagtgcagcaagtgcaatgaaatgggtcatgaagatgtgatttgtaaa 35940014  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 316
Target Start/End: Original strand, 25429282 - 25429356
Alignment:
Q  242 tttagatgttggagaagacctgatgctaagtgtaccaagtgtaatcaaatggggcatgaagctgttatttgtaaa 316  Q
    |||| |||||||||||| || ||||| ||||| | |||||| ||| ||||||| ||||||| ||| |||||||||    
T  25429282 tttaaatgttggagaaggccagatgcaaagtgcagcaagtgcaatgaaatgggtcatgaagatgtgatttgtaaa 25429356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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