View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7985_high_1 (Length: 565)

Name: NF7985_high_1
Description: NF7985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7985_high_1
NF7985_high_1
[»] chr3 (12 HSPs)
chr3 (18-565)||(48840193-48840746)
chr3 (387-565)||(50904652-50904826)
chr3 (376-565)||(38044009-38044192)
chr3 (452-564)||(55084893-55085005)
chr3 (480-565)||(50910066-50910151)
chr3 (452-561)||(38028687-38028796)
chr3 (452-561)||(38040002-38040111)
chr3 (452-545)||(38033696-38033789)
chr3 (452-561)||(38036714-38036823)
chr3 (507-565)||(50911845-50911903)
chr3 (480-565)||(38024824-38024909)
chr3 (480-565)||(38031276-38031361)
[»] chr2 (4 HSPs)
chr2 (49-166)||(3070680-3070797)
chr2 (483-564)||(3073676-3073757)
chr2 (90-145)||(3069535-3069590)
chr2 (166-210)||(3070614-3070658)
[»] chr8 (4 HSPs)
chr8 (452-561)||(21604675-21604784)
chr8 (480-565)||(21607245-21607330)
chr8 (513-565)||(21634649-21634701)
chr8 (452-532)||(21609725-21609805)
[»] chr4 (35 HSPs)
chr4 (483-564)||(17970406-17970487)
chr4 (515-561)||(27444778-27444824)
chr4 (515-565)||(27466927-27466977)
chr4 (515-565)||(27559224-27559274)
chr4 (515-565)||(27567361-27567411)
chr4 (522-563)||(27600661-27600702)
chr4 (514-565)||(27460584-27460635)
chr4 (515-562)||(27557598-27557645)
chr4 (522-565)||(27563337-27563380)
chr4 (522-565)||(27585794-27585837)
chr4 (515-565)||(27473998-27474048)
chr4 (515-565)||(27480007-27480057)
chr4 (515-565)||(27513760-27513810)
chr4 (515-565)||(27526096-27526146)
chr4 (518-563)||(27495644-27495689)
chr4 (532-565)||(27571729-27571762)
chr4 (521-565)||(27412770-27412814)
chr4 (521-565)||(27504028-27504072)
chr4 (514-565)||(27476793-27476844)
chr4 (531-565)||(27411456-27411490)
chr4 (515-565)||(27419055-27419105)
chr4 (515-561)||(27431132-27431178)
chr4 (515-565)||(27487089-27487139)
chr4 (515-565)||(27502119-27502169)
chr4 (515-561)||(27505686-27505732)
chr4 (515-561)||(27516593-27516639)
chr4 (515-565)||(27554415-27554465)
chr4 (531-564)||(27421931-27421964)
chr4 (532-565)||(27498521-27498554)
chr4 (521-565)||(27415727-27415771)
chr4 (521-565)||(27420514-27420558)
chr4 (521-565)||(27468317-27468361)
chr4 (521-565)||(27506804-27506848)
chr4 (521-565)||(27514997-27515041)
chr4 (521-565)||(27524630-27524674)
[»] chr5 (2 HSPs)
chr5 (521-565)||(1754794-1754838)
chr5 (515-561)||(1759362-1759408)


Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 18 - 565
Target Start/End: Original strand, 48840193 - 48840746
Alignment:
Q  18 cttttgaataagaaaaatacattagatacacttttatgaattgtggaggctactaggaacttagagtaaagggttgccactaattttgtgctttctgaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48840193 cttttgaataagaaaaatacattagatacacttttatgaattgtggaggctactaggaacttagaataaagggttgccactaattttgtgctttctgaca 48840292  T
Q  118 acagagagattcagctaagtcattgcaatgacacggttcttagcttatgattcagttaa-------tagaagcataaggcatataaaagtttgtaaactt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  48840293 acagagagattcagctaagtcattgcaatgacacggttcttagcttatgattcagttaatacttaatagaagcataaggcatataaaagtttgtaaactt 48840392  T
Q  211 ggtttcttttttagcaaggattcgcttatctagtagttcatcaatagaaacacagaggagccagttgagttgttgaaacactgtgtcattacgattagac 310  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48840393 ggtttctttttttccaaggattcacttatctagtagttcatcaatagaaacacagaggagccagttgagttgttgaaacactgtgtcattacgattagac 48840492  T
Q  311 agaaattatggagaggaaaataacttgttacgtagtatgtcattcagatggacatgtttcacccattcccgataaagggaaaaggaaaaatatttacaag 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48840493 agaaattatggagaggaaaataacttgttacgtagtatgtcattcagatggacatgtttcacccattcccgataaagggaaaagg-aaaatatttacaag 48840591  T
Q  411 tgtaaaataataaaatatgcctgttgtagaaaatatcactactaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaat 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48840592 tgtaaaataataaaatatgcctgttgtagaaaatatcactactaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaat 48840691  T
Q  511 gtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48840692 gtgcaagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatca 48840746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 387 - 565
Target Start/End: Original strand, 50904652 - 50904826
Alignment:
Q  387 gggaaaaggaaaaatatttacaagtgtaaaataataaaatatgcctgttgtagaaaatatcactactaatctatgtcagtatcttccagttttagattta 486  Q
    |||||||||||||||||||||||||||||||    |||| | |||| ||||  ||||| ||||||||||||||||||| | |||| ||| |  |||||||    
T  50904652 gggaaaaggaaaaatatttacaagtgtaaaa----aaaaaacgcctattgttcaaaatgtcactactaatctatgtcactctcttgcagctgcagattta 50904747  T
Q  487 tagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
     ||||||||||||| |  ||| || ||||| ||||| |||||| |||||||||| ||||| ||||||||||||||||||    
T  50904748 cagcccattgaagcgagaagtgatatgcaaaaaaacctcttctctgcaaggaatggtgaggccacccattggatgatca 50904826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 376 - 565
Target Start/End: Complemental strand, 38044192 - 38044009
Alignment:
Q  376 ttcccgataaagggaaaaggaaaaatatttacaagtgtaaaataataaaatatgcctgttgtagaaaatatcactactaatctatgtcagtatcttccag 475  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||      |||||| ||||  ||||| |||| |||||||||||||||| | || |||    
T  38044192 ttcccaataaagggaaaaggaaaaatatttacaagtgtaaaaaaa------atgcctattgttcaaaatgtcacgactaatctatgtcagtcttttgcag 38044099  T
Q  476 ttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
     |  || | |||| ||||||||||| |  |||||   ||||||||||| |||| ||||||||||||||||| || |||||||||||||||    
T  38044098 ctgcagctctatatcccattgaagcgagaagtaacacgcaagaaaacaccttcggtgcaaggaattgtgaggccgcccattggatgatca 38044009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 452 - 564
Target Start/End: Complemental strand, 55085005 - 55084893
Alignment:
Q  452 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccac 551  Q
    ||||||||||||| | |||| |||| | ||||||||||  ||||||||| |  |||||| || |||||||||||||||||||||||||||||||| ||||    
T  55085005 ctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttctgtgcaaggaattgtgaggccac 55084906  T
Q  552 ccattggatgatc 564  Q
    |||||||||||||    
T  55084905 ccattggatgatc 55084893  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 480 - 565
Target Start/End: Complemental strand, 50910151 - 50910066
Alignment:
Q  480 agatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||||||||| ||||||||| |  |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  50910151 agatttatagctcattgaagcgagaagtaatttgcaagaagacatcttctgtgcaaggaattgtgaggccacccattggatgatca 50910066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 452 - 561
Target Start/End: Original strand, 38028687 - 38028796
Alignment:
Q  452 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccac 551  Q
    ||||||||||||||| || |  ||| | ||||||||||||||||||||  |  |||||| ||||||||||| ||||||||||||||||||||||| || |    
T  38028687 ctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgc 38028786  T
Q  552 ccattggatg 561  Q
    ||||||||||    
T  38028787 ccattggatg 38028796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 452 - 561
Target Start/End: Original strand, 38040002 - 38040111
Alignment:
Q  452 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccac 551  Q
    ||||||||||||||| || |  ||| | ||||||||||||||||||||  |  |||||| ||||||||||| ||||||||||||||||||||||| || |    
T  38040002 ctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgc 38040101  T
Q  552 ccattggatg 561  Q
    ||||||||||    
T  38040102 ccattggatg 38040111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 452 - 545
Target Start/End: Original strand, 38033696 - 38033789
Alignment:
Q  452 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtga 545  Q
    ||||||||||||||| || |  ||| | ||||||||||||||||||||| |  |||||| ||||||||||||||||||||||| ||||||||||    
T  38033696 ctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagcgagaagtaatatgcaagaaaacatcttctgtgcagggaattgtga 38033789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 452 - 561
Target Start/End: Original strand, 38036714 - 38036823
Alignment:
Q  452 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccac 551  Q
    ||||||||||||||| || |  ||| | ||||||||||||||||||||  |  |||||| ||||||||||| | ||||||||||||||||||||| || |    
T  38036714 ctaatctatgtcagtctcctatagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtattctgtgcaaggaattgtgaggccgc 38036813  T
Q  552 ccattggatg 561  Q
    ||||||||||    
T  38036814 ccattggatg 38036823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 50911845 - 50911903
Alignment:
Q  507 taatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||    
T  50911845 taatgtgcaagaaaacaccttctgtgcaaggaattgttaggccacccattgggtgatca 50911903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 480 - 565
Target Start/End: Original strand, 38024824 - 38024909
Alignment:
Q  480 agatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||||||||||||||||||| |  |||||| | || |||||  ||||||||||||||||| ||||| ||||||||||| ||||||    
T  38024824 agatttatagcccattgaagcgagaagtaatttccatgaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatca 38024909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 480 - 565
Target Start/End: Original strand, 38031276 - 38031361
Alignment:
Q  480 agatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||||||||||||||||||| |  |||||| | || |||||  ||||||||||||||||| ||||| ||||||||||| ||||||    
T  38031276 agatttatagcccattgaagcgagaagtaatttccatgaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatca 38031361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 49 - 166
Target Start/End: Complemental strand, 3070797 - 3070680
Alignment:
Q  49 ttttatgaattgtggaggctactaggaacttagagtaaagggttgccactaattttgtgctttctgacaacagagagattcagctaagtcattgcaatga 148  Q
    |||||||| | ||||||||| |||||||||  |||| || ||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| ||    
T  3070797 ttttatgagtagtggaggcttctaggaactgggagtcaatggttgccacgaattttgcgctttctgacaacagagagattcagttaagtcattgcaacga 3070698  T
Q  149 cacggttcttagcttatg 166  Q
    || |||||||||||||||    
T  3070697 catggttcttagcttatg 3070680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 483 - 564
Target Start/End: Complemental strand, 3073757 - 3073676
Alignment:
Q  483 tttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 564  Q
    ||||||| ||||||||||||  |||||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  3073757 tttatagaccattgaagctagaagtaacatgcaaaaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatc 3073676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 3069590 - 3069535
Alignment:
Q  90 gttgccactaattttgtgctttctgacaacagagagattcagctaagtcattgcaa 145  Q
    |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||    
T  3069590 gttgccactaatttcgcgctttctgacaacagagagattcagttaagtcattgcaa 3069535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 3070658 - 3070614
Alignment:
Q  166 gattcagttaatagaagcataaggcatataaaagtttgtaaactt 210  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||    
T  3070658 gattcagttaatagaagcataaggcatataacagtttgtgaactt 3070614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 452 - 561
Target Start/End: Original strand, 21604675 - 21604784
Alignment:
Q  452 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccac 551  Q
    ||||||||||||||| || |  ||| | ||||||||||||||||||||  |  |||||| ||||||||||| ||||||||||||||||||||||| || |    
T  21604675 ctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgc 21604774  T
Q  552 ccattggatg 561  Q
    ||||||||||    
T  21604775 ccattggatg 21604784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 480 - 565
Target Start/End: Original strand, 21607245 - 21607330
Alignment:
Q  480 agatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||||||||||||||||||| |  |||||| | || ||||| |||||||||||||||||  ||||| ||||||||||| ||||||    
T  21607245 agatttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaaggaaccgtgaggccacccattgggtgatca 21607330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 513 - 565
Target Start/End: Complemental strand, 21634701 - 21634649
Alignment:
Q  513 gcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||||||||||| ||||||||||||||||  || |||||| ||||||||    
T  21634701 gcaagaaaacatcttcggtgcaaggaattgtgaagccgcccattcgatgatca 21634649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 532
Target Start/End: Original strand, 21609725 - 21609805
Alignment:
Q  452 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtg 532  Q
    ||||||||||||||| || |  ||| | ||||||||||||||||||||  |  |||||| ||||||||||  |||||||||    
T  21609725 ctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaatgtcttctgtg 21609805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 483 - 564
Target Start/End: Complemental strand, 17970487 - 17970406
Alignment:
Q  483 tttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatc 564  Q
    ||||||| ||||||||||||  |||||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  17970487 tttatagaccattgaagctagaagtaacatgcaaaaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatc 17970406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 515 - 561
Target Start/End: Original strand, 27444778 - 27444824
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatg 561  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  27444778 aagaaaacgtcttctctgcaaggaattgtgagaccacccattggatg 27444824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 515 - 565
Target Start/End: Complemental strand, 27466977 - 27466927
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||| |||||| |||||||||| ||||||||||||||||||||||||    
T  27466977 aagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatca 27466927  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 515 - 565
Target Start/End: Original strand, 27559224 - 27559274
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  27559224 aagaaagcatcttcactgcaaggaattgtgagaccacccattggatgatca 27559274  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 515 - 565
Target Start/End: Complemental strand, 27567411 - 27567361
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  27567411 aagaaagcatcttcgctgcaaggaattgtgagaccacccattggatgatca 27567361  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 522 - 563
Target Start/End: Complemental strand, 27600702 - 27600661
Alignment:
Q  522 catcttctgtgcaaggaattgtgagaccacccattggatgat 563  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  27600702 catcttctttgcaaggaattgtgagaccacccattggatgat 27600661  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 514 - 565
Target Start/End: Complemental strand, 27460635 - 27460584
Alignment:
Q  514 caagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||||||  |||||| |||||||||| ||||||||||||||||||||||||    
T  27460635 caagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatca 27460584  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 515 - 562
Target Start/End: Complemental strand, 27557645 - 27557598
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatga 562  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||||||    
T  27557645 aagaaaacatcttctctgcatggaatagtgagaccacccattggatga 27557598  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 522 - 565
Target Start/End: Original strand, 27563337 - 27563380
Alignment:
Q  522 catcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||    
T  27563337 catcttcagtgcaaggaattgtgaggccacccattggatgatca 27563380  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 522 - 565
Target Start/End: Complemental strand, 27585837 - 27585794
Alignment:
Q  522 catcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||||||||||||||||| |||||||| |||||||||||||||    
T  27585837 catcttctgtgcaaggaatggtgagacctcccattggatgatca 27585794  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 565
Target Start/End: Complemental strand, 27474048 - 27473998
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||| ||||||  ||||||||| ||||||||||||||||||||||||    
T  27474048 aagaaaacgtcttctccgcaaggaatggtgagaccacccattggatgatca 27473998  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 565
Target Start/End: Complemental strand, 27480057 - 27480007
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||  |||||| |||||||||| ||||||||||||||||||||||||    
T  27480057 aagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatca 27480007  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 565
Target Start/End: Original strand, 27513760 - 27513810
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||| || |||||| |||||||||| ||||||||||||||||||||||||    
T  27513760 aagaatacttcttctctgcaaggaatagtgagaccacccattggatgatca 27513810  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 565
Target Start/End: Original strand, 27526096 - 27526146
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||| |||||| |||||||||| |||||||||||| |||||||||||    
T  27526096 aagaaaacgtcttctctgcaaggaatagtgagaccacccgttggatgatca 27526146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 518 - 563
Target Start/End: Complemental strand, 27495689 - 27495644
Alignment:
Q  518 aaaacatcttctgtgcaaggaattgtgagaccacccattggatgat 563  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||    
T  27495689 aaaatatcttctctgcaaggaatggtgagaccacccattggatgat 27495644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 532 - 565
Target Start/End: Complemental strand, 27571762 - 27571729
Alignment:
Q  532 gcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||||||||||||||||||||||||||||||||    
T  27571762 gcaaggaattgtgagaccacccattggatgatca 27571729  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 521 - 565
Target Start/End: Complemental strand, 27412814 - 27412770
Alignment:
Q  521 acatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||    
T  27412814 acatcttccgtgcaaggaatggtgaggccacccattggatgatca 27412770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 521 - 565
Target Start/End: Complemental strand, 27504072 - 27504028
Alignment:
Q  521 acatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||    
T  27504072 acatcttcggtgcaaggaatggtgaggccacccattggatgatca 27504028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 514 - 565
Target Start/End: Complemental strand, 27476844 - 27476793
Alignment:
Q  514 caagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||||||  |||||| |||||||||| || |||||||||||||||||||||    
T  27476844 caagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatca 27476793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 531 - 565
Target Start/End: Original strand, 27411456 - 27411490
Alignment:
Q  531 tgcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||||||||||||||||||||||| |||||||||    
T  27411456 tgcaaggaattgtgagaccacccataggatgatca 27411490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 565
Target Start/End: Original strand, 27419055 - 27419105
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||| |||||||   |||||||||||| |||||||||||||||||||||    
T  27419055 aagaaagcatcttcaccgcaaggaattgtaagaccacccattggatgatca 27419105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 561
Target Start/End: Original strand, 27431132 - 27431178
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatg 561  Q
    |||||||| |||||| ||||||||||||||||||||||  |||||||    
T  27431132 aagaaaacgtcttctctgcaaggaattgtgagaccaccggttggatg 27431178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 565
Target Start/End: Complemental strand, 27487139 - 27487089
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||  |||||| |||||||||| || |||||||||||||||||||||    
T  27487139 aagaaaatgtcttctttgcaaggaatagtaagaccacccattggatgatca 27487089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 565
Target Start/End: Original strand, 27502119 - 27502169
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||  |||||| |||||||||| || |||||||||||||||||||||    
T  27502119 aagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatca 27502169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 561
Target Start/End: Original strand, 27505686 - 27505732
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatg 561  Q
    |||||||  |||||| |||||||||| ||||||||||||||||||||    
T  27505686 aagaaaatctcttctctgcaaggaatagtgagaccacccattggatg 27505732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 561
Target Start/End: Original strand, 27516593 - 27516639
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatg 561  Q
    |||||||| |||||| |||||||||| |||||||| |||||||||||    
T  27516593 aagaaaacttcttctttgcaaggaatagtgagaccccccattggatg 27516639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 565
Target Start/End: Complemental strand, 27554465 - 27554415
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||| |||||| | |||||||||||||||| |||| |||||||||||    
T  27554465 aagaaaacgtcttctctacaaggaattgtgagactacccgttggatgatca 27554415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 531 - 564
Target Start/End: Original strand, 27421931 - 27421964
Alignment:
Q  531 tgcaaggaattgtgagaccacccattggatgatc 564  Q
    ||||||||||||||||||||||| ||||||||||    
T  27421931 tgcaaggaattgtgagaccacccgttggatgatc 27421964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 565
Target Start/End: Complemental strand, 27498554 - 27498521
Alignment:
Q  532 gcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||||||| ||||||||||||||||||||||||    
T  27498554 gcaaggaatagtgagaccacccattggatgatca 27498521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 565
Target Start/End: Complemental strand, 27415771 - 27415727
Alignment:
Q  521 acatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||||||||||||||| ||||| |||||||| | |||||||    
T  27415771 acatcttctgtgcaaggaatggtgaggccacccatggaatgatca 27415727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 565
Target Start/End: Complemental strand, 27420558 - 27420514
Alignment:
Q  521 acatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||| ||||||||||| ||||| |||||||| |||||||||    
T  27420558 acatcttccgtgcaaggaatggtgaggccacccatgggatgatca 27420514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 565
Target Start/End: Original strand, 27468317 - 27468361
Alignment:
Q  521 acatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||| ||||||||||| ||||| |||||||| |||||||||    
T  27468317 acatcttccgtgcaaggaatggtgaggccacccatgggatgatca 27468361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 565
Target Start/End: Complemental strand, 27506848 - 27506804
Alignment:
Q  521 acatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||| ||||||||||| ||||| |||||||| |||||||||    
T  27506848 acatcttcagtgcaaggaatggtgagtccacccatgggatgatca 27506804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 565
Target Start/End: Complemental strand, 27515041 - 27514997
Alignment:
Q  521 acatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||||||||| |||||||| ||||| |||||||| |||||||||    
T  27515041 acatcttctgtacaaggaatggtgaggccacccatgggatgatca 27514997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 565
Target Start/End: Complemental strand, 27524674 - 27524630
Alignment:
Q  521 acatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    |||||||| ||||| ||||| ||||| ||||||||||||||||||    
T  27524674 acatcttcggtgcacggaatggtgaggccacccattggatgatca 27524630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 521 - 565
Target Start/End: Complemental strand, 1754838 - 1754794
Alignment:
Q  521 acatcttctgtgcaaggaattgtgagaccacccattggatgatca 565  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||    
T  1754838 acatcttctgtgcaaagaatggtgaggccacccattggatgatca 1754794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 561
Target Start/End: Complemental strand, 1759408 - 1759362
Alignment:
Q  515 aagaaaacatcttctgtgcaaggaattgtgagaccacccattggatg 561  Q
    |||||||| |||||| ||||| |||| ||||||||||||||||||||    
T  1759408 aagaaaacttcttctctgcaaagaatggtgagaccacccattggatg 1759362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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