View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7985_low_1 (Length: 842)
Name: NF7985_low_1
Description: NF7985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7985_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 5e-49; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 159 - 270
Target Start/End: Original strand, 7431711 - 7431822
Alignment:
| Q |
159 |
accactacttctatgttagccaaacacaaaggtaacaggagtcaagaaatgctgcagccatcactatatgatgtaagctcttcaaagttagttttatcat |
258 |
Q |
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| T |
7431711 |
accactacttctatgttagccaaacaccaaggtaacaggagtcaagaaatgctgcagccatcactatatgatgtaacctcttcaaagttagttttatcat |
7431810 |
T |
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| Q |
259 |
atttgaatcatt |
270 |
Q |
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| T |
7431811 |
atttgcatcatt |
7431822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 7431597 - 7431639
Alignment:
| Q |
42 |
atttactactgcatagcagatatattagttatttctatccaac |
84 |
Q |
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| T |
7431597 |
atttactactgcatagaagatatattagttatttctatccaac |
7431639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 7431538 - 7431570
Alignment:
| Q |
13 |
aatatcaccaagcttcacattagaatgaaattt |
45 |
Q |
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| T |
7431538 |
aatatcaccaagcttcacattagaatgaaattt |
7431570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 795 - 825
Target Start/End: Original strand, 7431812 - 7431842
Alignment:
| Q |
795 |
tttgcatcattggcatttttaagcatgattc |
825 |
Q |
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| T |
7431812 |
tttgcatcattggcatttttaagcatgattc |
7431842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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