View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7985_low_10 (Length: 266)

Name: NF7985_low_10
Description: NF7985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7985_low_10
NF7985_low_10
[»] chr5 (2 HSPs)
chr5 (1-250)||(31610776-31611024)
chr5 (48-93)||(34250672-34250717)
[»] scaffold0116 (1 HSPs)
scaffold0116 (47-141)||(10067-10162)
[»] chr3 (1 HSPs)
chr3 (47-133)||(11462476-11462562)
[»] chr1 (3 HSPs)
chr1 (47-140)||(49593214-49593307)
chr1 (47-96)||(49275470-49275519)
chr1 (69-141)||(26308948-26309022)
[»] chr7 (1 HSPs)
chr7 (67-112)||(10484327-10484372)
[»] chr6 (1 HSPs)
chr6 (66-140)||(14609066-14609141)
[»] chr2 (1 HSPs)
chr2 (70-138)||(2242409-2242478)
[»] chr4 (2 HSPs)
chr4 (60-144)||(40745217-40745302)
chr4 (52-112)||(29053250-29053310)
[»] chr8 (1 HSPs)
chr8 (66-102)||(44582224-44582260)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 31610776 - 31611024
Alignment:
Q  1 aataagtgaggcctaaagcaaagttgaatatatggaaacnnnnnnnattagaatatgatgctttcttgcttgtaaaatctaatgaaaaataatttttggt 100  Q
    ||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||  |||||||||||||||||||| ||    
T  31610776 aataagtgaagcctaaagcaaagttgaatatatggaaactttttttattagaatatgatgcttttttgcttgtaagctctaatgaaaaataattttttgt 31610875  T
Q  101 tgggaggcctaagcgagggttttggtggccttatccttaggtcgtcatgcggataacccacttatacattttgaaaaattaaatttctagtcgttaaact 200  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||    
T  31610876 tggggggccttagcgagggttttggtggccttatccttaggtcgtcatgcggataacccacttatacaccttgaaaaattaaatttctaatcgttaaact 31610975  T
Q  201 acttaatnnnnnnnttaaagtcaattaagtgaaaatatattaatagaaaa 250  Q
    |||| ||       |||||||||| |||||||||||||||||||||||||    
T  31610976 acttgataaaataattaaagtcaa-taagtgaaaatatattaatagaaaa 31611024  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 34250717 - 34250672
Alignment:
Q  48 ttagaatatgatgctttcttgcttgtaaaatctaatgaaaaataat 93  Q
    |||||| |||| ||| | ||||||||||||||||||||||||||||    
T  34250717 ttagaacatgaggctgttttgcttgtaaaatctaatgaaaaataat 34250672  T

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Target: scaffold0116 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 10162 - 10067
Alignment:
Q  47 attagaatatgatgctttcttgcttgtaaaatctaatgaaaaataatttttggttgggaggcct-aagcgagggttttggtggccttatccttagg 141  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||  ||||| |||||||   ||||||||||||  |||||||    
T  10162 attagaatatgaggcttttttacttgtaaaatctaatgaaaaataattttttgttggagggcctaaagcgagacctttggtggccttgcccttagg 10067  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 11462562 - 11462476
Alignment:
Q  47 attagaatatgatgctttcttgcttgtaaaatctaatgaaaaataatttttggttgggaggcct-aagcgagggttttggtggcctta 133  Q
    |||||||||||| || || |||||||||||||||||||||||||||||||| ||  || ||||| ||||||||| |||||||||||||    
T  11462562 attagaatatgaggcctt-ttgcttgtaaaatctaatgaaaaataattttttgtatgggggcctaaagcgagggctttggtggcctta 11462476  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 49593214 - 49593307
Alignment:
Q  47 attagaatatgatgctttcttgcttgtaaaatctaatgaaaaataatttttggttgggaggcct-aagcgagggttttggtggccttatccttag 140  Q
    |||||||||||| ||||| ||||| |||||||||||||||||||||||||| || |   ||| | |||||||| |||||||||||||| ||||||    
T  49593214 attagaatatgaggcttt-ttgctcgtaaaatctaatgaaaaataattttttgtcgatgggcttaaagcgaggattttggtggccttacccttag 49593307  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 49275470 - 49275519
Alignment:
Q  47 attagaatatgatgctttcttgcttgtaaaatctaatgaaaaataatttt 96  Q
    |||||||||||| || || |||||||||||||||||||||||||||||||    
T  49275470 attagaatatgaggcctttttgcttgtaaaatctaatgaaaaataatttt 49275519  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 26309022 - 26308948
Alignment:
Q  69 cttgtaaaatctaatgaaaaataat-ttttggttgggaggcct-aagcgagggttttggtggccttatccttagg 141  Q
    |||||||||| |||||||||||||| ||||  ||||| ||||| ||||||||| ||||||||||||| |||||||    
T  26309022 cttgtaaaatttaatgaaaaataattttttttttggggggcctaaagcgagggctttggtggccttacccttagg 26308948  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 10484327 - 10484372
Alignment:
Q  67 tgcttgtaaaatctaatgaaaaataatttttggttgggaggcctaa 112  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||    
T  10484327 tgcttgtaaaatataatgaaaaataattttttgttgggaggcctaa 10484372  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 14609066 - 14609141
Alignment:
Q  66 ttgcttgtaaaatctaatgaaaaataatttttggttgggaggcct-aagcgagggttttggtggccttatccttag 140  Q
    |||||||||||||||||| ||||||||||||| ||||||||  || |||| || | ||||||||||||| ||||||    
T  14609066 ttgcttgtaaaatctaataaaaaataattttttgttgggagatctaaagctagtgctttggtggccttacccttag 14609141  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 2242409 - 2242478
Alignment:
Q  70 ttgtaaaatctaa-tgaaaaataatttttggttgggaggcctaag-cgagggttttggtggccttatcctt 138  Q
    ||||||||||||| |||||||||||||||| ||||| |||||||  | |||||||||||||||||| ||||    
T  2242409 ttgtaaaatctaaatgaaaaataatttttg-ttggggggcctaaaacaagggttttggtggccttaccctt 2242478  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 40745302 - 40745217
Alignment:
Q  60 gctttcttgcttgtaaaatctaatgaaaaataatttttggttgggaggcct-aagcgagggttttggtggccttatccttaggtcg 144  Q
    ||||| ||| || ||||||||||||||||||| ||||| ||||| |||||| || |||| ||||| || ||||||| ||| |||||    
T  40745302 gcttttttgtttataaaatctaatgaaaaatatttttttgttggaaggcctaaaacgagagttttagtagccttattcttgggtcg 40745217  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 29053250 - 29053310
Alignment:
Q  52 aatatgatgctttcttgcttgtaaaatctaatgaaaaataatttttggttgggaggcctaa 112  Q
    ||||||| || || |||||| ||||||||||||||||||||||| | |||||  |||||||    
T  29053250 aatatgaagcatttttgcttctaaaatctaatgaaaaataatttcttgttggtgggcctaa 29053310  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 44582224 - 44582260
Alignment:
Q  66 ttgcttgtaaaatctaatgaaaaataatttttggttg 102  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  44582224 ttgctcgtaaaatctaatgaaaaataattttttgttg 44582260  T

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