View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7985_low_11 (Length: 249)

Name: NF7985_low_11
Description: NF7985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7985_low_11
NF7985_low_11
[»] scaffold0110 (1 HSPs)
scaffold0110 (1-245)||(3786-4030)
[»] chr6 (2 HSPs)
chr6 (5-42)||(7268048-7268085)
chr6 (1-43)||(4247229-4247271)
[»] chr7 (4 HSPs)
chr7 (7-47)||(753355-753395)
chr7 (7-46)||(28691965-28692004)
chr7 (6-43)||(47303646-47303683)
chr7 (14-50)||(46091487-46091523)
[»] chr2 (2 HSPs)
chr2 (5-45)||(9477860-9477900)
chr2 (6-46)||(29316925-29316965)
[»] chr8 (2 HSPs)
chr8 (7-48)||(27754584-27754625)
chr8 (6-46)||(31875709-31875749)
[»] chr5 (2 HSPs)
chr5 (5-46)||(1084240-1084281)
chr5 (1-45)||(33961584-33961628)
[»] chr4 (2 HSPs)
chr4 (7-44)||(8422988-8423025)
chr4 (14-46)||(14011129-14011161)
[»] chr3 (2 HSPs)
chr3 (13-45)||(24235825-24235857)
chr3 (6-46)||(37308215-37308255)
[»] chr1 (1 HSPs)
chr1 (1-45)||(30237891-30237935)


Alignment Details
Target: scaffold0110 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 4030 - 3786
Alignment:
Q  1 aagtacttatactataaacacttcattaagttgtttatccaaacagagtccaatcttcatcaattttcaacaagatccatcaaattcaatgtcacaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4030 aagtacttatactataaacacttcattaagttgtttatccaaacagagtccaatcttcatcaattttcaacaagatccatcaaattcaatgtcacaaaat 3931  T
Q  101 accaaacaaagaacatcaaaacatatcatagatagaagaaaaaattataatttttgtagaaggaaaactcaccaaatagagactattcaagcacttagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3930 accaaacaaagaacatcaaaacatatcatagatagaagaaaaaattataatttttgtagaaggaaaactcaccaaatagagactattcaagcacttagaa 3831  T
Q  201 catccaccaagaccttgaaatccattaccatttttcttctcactc 245  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  3830 catccaccaagaccttgaaatccattaccatttttcttcttactc 3786  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 7268048 - 7268085
Alignment:
Q  5 acttatactataaacacttcattaagttgtttatccaa 42  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  7268048 acttatactataaacacttaattaagttgtttatccaa 7268085  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4247229 - 4247271
Alignment:
Q  1 aagtacttatactataaacacttcattaagttgtttatccaaa 43  Q
    |||||||||| |||||| ||||| |||||||||||||||||||    
T  4247229 aagtacttatgctataagcacttaattaagttgtttatccaaa 4247271  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 753355 - 753395
Alignment:
Q  7 ttatactataaacacttcattaagttgtttatccaaacaga 47  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  753355 ttatgctataaacacttaattaagttgtttatccaaacaga 753395  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 28691965 - 28692004
Alignment:
Q  7 ttatactataaacacttcattaagttgtttatccaaacag 46  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  28691965 ttatattataaacacttaattaagttgtttatccaaacag 28692004  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 47303646 - 47303683
Alignment:
Q  6 cttatactataaacacttcattaagttgtttatccaaa 43  Q
    |||||||||||||||||  |||||||||||||||||||    
T  47303646 cttatactataaacactcaattaagttgtttatccaaa 47303683  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 46091523 - 46091487
Alignment:
Q  14 ataaacacttcattaagttgtttatccaaacagagtc 50  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  46091523 ataaacacttcattaaattgtttatccaaacatagtc 46091487  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 9477900 - 9477860
Alignment:
Q  5 acttatactataaacacttcattaagttgtttatccaaaca 45  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  9477900 acttatgctataaacacttaattaagttgtttatccaaaca 9477860  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 29316925 - 29316965
Alignment:
Q  6 cttatactataaacacttcattaagttgtttatccaaacag 46  Q
    ||||| || ||||||||| ||||||||||||||||||||||    
T  29316925 cttatgctgtaaacacttaattaagttgtttatccaaacag 29316965  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 27754584 - 27754625
Alignment:
Q  7 ttatactataaacacttcattaagttgtttatccaaacagag 48  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||    
T  27754584 ttatactataaacacttaattaagttgcttacccaaacagag 27754625  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 31875709 - 31875749
Alignment:
Q  6 cttatactataaacacttcattaagttgtttatccaaacag 46  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  31875709 cttatgctataaacgcttcattaagttgtctatccaaacag 31875749  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 1084240 - 1084281
Alignment:
Q  5 acttatactataaacacttcattaagttgtttatccaaacag 46  Q
    |||||||  |||||||||| ||||||||||||||||||||||    
T  1084240 acttatatgataaacacttaattaagttgtttatccaaacag 1084281  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33961628 - 33961584
Alignment:
Q  1 aagtacttatactataaacacttcattaagttgtttatccaaaca 45  Q
    |||| |||||||||||||||||| ||||||| |||| ||||||||    
T  33961628 aagtgcttatactataaacacttaattaagtcgtttctccaaaca 33961584  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 8422988 - 8423025
Alignment:
Q  7 ttatactataaacacttcattaagttgtttatccaaac 44  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  8422988 ttatgctataaacacttaattaagttgtttatccaaac 8423025  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 14011161 - 14011129
Alignment:
Q  14 ataaacacttcattaagttgtttatccaaacag 46  Q
    |||||||||| ||||||||||||||||||||||    
T  14011161 ataaacacttaattaagttgtttatccaaacag 14011129  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 24235825 - 24235857
Alignment:
Q  13 tataaacacttcattaagttgtttatccaaaca 45  Q
    ||||||||||| |||||||||||||||||||||    
T  24235825 tataaacacttaattaagttgtttatccaaaca 24235857  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 37308215 - 37308255
Alignment:
Q  6 cttatactataaacacttcattaagttgtttatccaaacag 46  Q
    ||||| |||||| ||||| ||||||||||||||||||||||    
T  37308215 cttatgctataagcacttaattaagttgtttatccaaacag 37308255  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30237891 - 30237935
Alignment:
Q  1 aagtacttatactataaacacttcattaagttgtttatccaaaca 45  Q
    |||| ||||| ||||| |||||| |||||||||||||||||||||    
T  30237891 aagtgcttatgctatagacacttaattaagttgtttatccaaaca 30237935  T

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