View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7985_low_16 (Length: 214)
Name: NF7985_low_16
Description: NF7985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7985_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 52205636 - 52205821
Alignment:
| Q |
10 |
gaagaatatattttacaactcacttgattgatactataattctcttttatgtaatattttaacgtgggtctttattcattcgacattttttcaaaatatg |
109 |
Q |
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| T |
52205636 |
gaagaatatattttacaactcacttgattgatactataattctcttttatgtaatattttaacgtgggtccttattcattcgacattttttcaaaatatg |
52205735 |
T |
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| Q |
110 |
tctcattaaacagttctaggaaagtaaatttgttgcattcgtagaacaattctcccgtttgtatcataacaattctaatgtaaacaac |
197 |
Q |
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| T |
52205736 |
tctcattaaacagttctaggaaagtaaatttgttgcattcgtagaacaattctcccgtttgtatcataac--ttctaatgtaaacaac |
52205821 |
T |
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Target: chr8 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 10 - 192
Target Start/End: Original strand, 34309712 - 34309894
Alignment:
| Q |
10 |
gaagaatatattttacaactcacttgattgatactataattctcttttatgtaatattttaacgtg--ggtctttattcattcgacattttttcaaaata |
107 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||| |||||||||||| ||||||| |
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| T |
34309712 |
gaagaatatattgtacaactcacttgattgatactataattctcttttatgtaatattttaacgtgtgggcccttattctttcgacatttttgcaaaata |
34309811 |
T |
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| Q |
108 |
tgtctcattaaacagttctaggaaagtaaatttgttgcattcgtagaacaattctcccgtttgtatcataacaattctaatgtaa |
192 |
Q |
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| T |
34309812 |
tgtctcattgaacagttctaggaaagtaaatctgtggcattcgtagaccaattctcccgtttgtatcataac--ttctaatgtaa |
34309894 |
T |
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