View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7985_low_3 (Length: 496)

Name: NF7985_low_3
Description: NF7985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7985_low_3
NF7985_low_3
[»] chr4 (10 HSPs)
chr4 (19-487)||(38916425-38916893)
chr4 (291-376)||(17524202-17524287)
chr4 (291-368)||(49984136-49984213)
chr4 (291-368)||(11306591-11306668)
chr4 (296-368)||(45505397-45505469)
chr4 (291-368)||(31143736-31143813)
chr4 (296-368)||(4592693-4592765)
chr4 (318-379)||(4592403-4592464)
chr4 (287-368)||(49983787-49983868)
chr4 (296-368)||(12292892-12292964)
[»] chr3 (5 HSPs)
chr3 (326-454)||(31527967-31528095)
chr3 (296-361)||(33241849-33241914)
chr3 (296-369)||(37285884-37285957)
chr3 (318-379)||(30548058-30548121)
chr3 (285-365)||(33419882-33419962)
[»] chr8 (11 HSPs)
chr8 (296-391)||(3015996-3016091)
chr8 (297-368)||(18935386-18935457)
chr8 (363-438)||(2352166-2352241)
chr8 (330-429)||(3111674-3111772)
chr8 (296-370)||(16049813-16049887)
chr8 (287-368)||(18429436-18429517)
chr8 (311-379)||(7644797-7644865)
chr8 (296-368)||(9710219-9710291)
chr8 (296-379)||(18548541-18548624)
chr8 (287-365)||(4623441-4623519)
chr8 (296-368)||(7535591-7535663)
[»] chr1 (14 HSPs)
chr1 (290-471)||(40744048-40744226)
chr1 (296-368)||(48171445-48171517)
chr1 (296-365)||(48171777-48171846)
chr1 (292-368)||(40743901-40743976)
chr1 (296-379)||(33460212-33460295)
chr1 (291-368)||(25622606-25622683)
chr1 (338-412)||(16496564-16496637)
chr1 (290-368)||(31872937-31873014)
chr1 (290-368)||(42604967-42605045)
chr1 (291-368)||(33459893-33459970)
chr1 (291-367)||(8718535-8718611)
chr1 (296-352)||(14419823-14419879)
chr1 (280-352)||(18519304-18519376)
chr1 (296-368)||(31872711-31872783)
[»] chr2 (13 HSPs)
chr2 (298-426)||(10307537-10307663)
chr2 (291-368)||(26845519-26845596)
chr2 (296-448)||(36121956-36122106)
chr2 (296-368)||(43531931-43532002)
chr2 (289-368)||(43971851-43971930)
chr2 (291-368)||(3217283-3217360)
chr2 (291-368)||(15988587-15988663)
chr2 (296-379)||(29526599-29526681)
chr2 (291-370)||(32622216-32622295)
chr2 (287-368)||(14473867-14473948)
chr2 (291-411)||(43532066-43532187)
chr2 (288-332)||(1352827-1352871)
chr2 (318-362)||(3217498-3217542)
[»] scaffold0548 (1 HSPs)
scaffold0548 (291-368)||(3369-3446)
[»] chr7 (3 HSPs)
chr7 (279-368)||(24188207-24188296)
chr7 (291-368)||(22566301-22566378)
chr7 (296-364)||(7460883-7460951)
[»] chr6 (6 HSPs)
chr6 (312-368)||(22793320-22793376)
chr6 (317-368)||(6611635-6611686)
chr6 (296-367)||(22793606-22793677)
chr6 (318-368)||(17342913-17342963)
chr6 (282-368)||(34829893-34829979)
chr6 (312-368)||(29674867-29674923)
[»] chr5 (1 HSPs)
chr5 (296-367)||(25508143-25508214)
[»] scaffold0015 (1 HSPs)
scaffold0015 (291-364)||(47417-47490)


Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 487
Target Start/End: Original strand, 38916425 - 38916893
Alignment:
Q  19 ggttgattatattcttggtgtttctgaccctatacaatggcattctgaggtactgatttgtcatgatgtgtctgttatgccacctgttaaatgagttgct 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38916425 ggttgattatattcttggtgtttctgaccctatacaatggcattctgaggtactgatttgtcatgatgtgtctgttatgccacctgttaaatgagttgca 38916524  T
Q  119 taatatttgaatgtcttactgatataattttacannnnnnnccttgtcttgnnnnnnnaatgtcatcaatcaagaatctgaaaatgaataagcatcacta 218  Q
    ||||||||||||||||||||||||||||||||||       |  |||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  38916525 taatatttgaatgtcttactgatataattttacatttttttctctgtcttgtttttttaatgtcatcaatcaagaatctgaaaatgaataagcatcacta 38916624  T
Q  219 tgcgtcatggatggtgcaccttggtggagagaggctggtacttgctctcaatttaactattcatttaattttggctaaattgcatgttcggttccttaag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38916625 tgcgtcatggatggtgcaccttggtggagagaggctggtacttgctctcaatttaactattcatttaattttggctaaattgcatgttcggttccttaag 38916724  T
Q  319 tttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttgatatcttacgtcactgatgtcaacataagttcatcctttccgtcaaattt 418  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38916725 tttattttaggtttcatgttggtcccctacgtttagaaagtttcaagttgatctcttacgtcactgatgtcaacataagttcatcctttccgtcaaattt 38916824  T
Q  419 tgagttaactctgcctaaaacattcacgtggcaccctgcaaagttatccacgttgcgtctctgctactc 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38916825 tgagttaactctgcctaaaacattcacgtggcaccctgcaaagttatccacgttgcgtctctgttactc 38916893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 376
Target Start/End: Original strand, 17524202 - 17524287
Alignment:
Q  291 ggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttgatatctta 376  Q
    |||| ||||||||||| | | ||||| ||||||||||| ||||| ||||||||| |||||||  |||||||||||||||| |||||    
T  17524202 ggcttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttgatctctta 17524287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 49984213 - 49984136
Alignment:
Q  291 ggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||| ||||||||||| | | ||||| |||||||||||||||||||||||| || |||||||  ||||||||||||||    
T  49984213 ggcttaattgcatgtttgatcccttatgtttattttaggtttcatgttggttccttatgttttaaaagtttcaagttg 49984136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 11306668 - 11306591
Alignment:
Q  291 ggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||| ||||||||||| | | ||||| ||||||||||| ||||| ||||||||| |||||||  ||||||||||||||    
T  11306668 ggcttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttg 11306591  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 368
Target Start/End: Complemental strand, 45505469 - 45505397
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    ||||||||||| | | ||||| ||||||||||| ||||| ||||||||| |||||||  ||||||||||||||    
T  45505469 aattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttg 45505397  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 31143813 - 31143736
Alignment:
Q  291 ggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||| ||||||||||| ||| |||   |||||||||||||||||||||| |||| |||||||  ||||||| ||||||    
T  31143813 ggcttaattgcatgtttggtccctggtgtttattttaggtttcatgttgatcccttatgttttaaaagttttaagttg 31143736  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 368
Target Start/End: Complemental strand, 4592765 - 4592693
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    ||||||||||| ||| ||||| ||||||||||||||| | ||||||| | |||||||  ||||||| ||||||    
T  4592765 aattgcatgtttggtcccttatgtttattttaggttttaagttggtctcttatgttttaaaagttttaagttg 4592693  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 4592403 - 4592464
Alignment:
Q  318 gtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttgatatcttacgt 379  Q
    ||||| ||||||||| | ||||||||| |||||||  ||||||||||||| || ||||||||    
T  4592403 gtttaatttaggttttaagttggtcccttatgttttaaaagtttcaagttaatctcttacgt 4592464  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 368
Target Start/End: Original strand, 49983787 - 49983868
Alignment:
Q  287 ttttggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||||||| ||||||||||| ||| ||||  | ||||||||| ||||| ||||||||  |||||||  ||||||| ||||||    
T  49983787 ttttggcttaattgcatgtttggtcccttgtgcttattttagatttcaagttggtcctttatgttttaaaagtttgaagttg 49983868  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 12292892 - 12292964
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||||||||||   | ||||| ||||||||||||||| | ||||||||| | |||||  ||||||||||||||    
T  12292892 aattgcatgtttaatcccttatgtttattttaggtttaaagttggtcccttttgttttaaaagtttcaagttg 12292964  T

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Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 326 - 454
Target Start/End: Original strand, 31527967 - 31528095
Alignment:
Q  326 taggtttcatgttggtcccctatgtttagaaagtttcaagttgatatcttacgtcactgatgtcaacataagttcatcctttccgtcaaattttgagtta 425  Q
    ||||||||| ||||||| |||| ||||| |||||||||||||| |  ||||| | |||||||||||||||| |||||| |||||||||||||||||||||    
T  31527967 taggtttcaagttggtcacctacgtttaaaaagtttcaagttggttccttacattactgatgtcaacataaattcatcatttccgtcaaattttgagtta 31528066  T
Q  426 actctgcctaaaacattcacgtggcaccc 454  Q
    ||| || ||||| ||||||| ||||||||    
T  31528067 actgtgtctaaatcattcacatggcaccc 31528095  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 33241849 - 33241914
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagttt 361  Q
    ||||||||| | ||| ||||||||||||||||||||||| |||| |||| |||||||  |||||||    
T  33241849 aattgcatggttggtcccttaagtttattttaggtttcaagttgttcccttatgttttaaaagttt 33241914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 296 - 369
Target Start/End: Complemental strand, 37285957 - 37285884
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttga 369  Q
    |||||||||||  ||||| || ||||||||||||||| | ||||||||| ||| |||  |||||||||||||||    
T  37285957 aattgcatgtttagttccctatgtttattttaggttttaagttggtcccttatattttaaaagtttcaagttga 37285884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 30548121 - 30548058
Alignment:
Q  318 gtttattttaggtttcatgttggtcccctatgtttagaaagtttc--aagttgatatcttacgt 379  Q
    ||||||||||||||||| ||||||||| ||| |||  ||||||||  |||||||| ||||||||    
T  30548121 gtttattttaggtttcaagttggtcccatatcttttaaaagtttcaaaagttgatctcttacgt 30548058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 365
Target Start/End: Complemental strand, 33419962 - 33419882
Alignment:
Q  285 aattttggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaag 365  Q
    ||||| |||| ||||||||||| | | ||||| ||||||||||  ||| | ||||||||| |||||||  |||||||||||    
T  33419962 aatttaggcttaattgcatgtttgatcccttatgtttattttactttttaagttggtcccttatgttttaaaagtttcaag 33419882  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 391
Target Start/End: Complemental strand, 3016091 - 3015996
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttgatatcttacgtcactgatgtcaa 391  Q
    ||||||||||| ||| ||||||||||||||||||||||| |||||||||| || |||| ||||||||||||||||  |||| ||||||||||||||    
T  3016091 aattgcatgtttggtcccttaagtttattttaggtttcaagttggtcccccatctttaaaaagtttcaagttgatcccttatgtcactgatgtcaa 3015996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 368
Target Start/End: Complemental strand, 18935457 - 18935386
Alignment:
Q  297 attgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  18935457 attgcatgtttggtcccttatgtttattttaggtttcatgttggtcccttatgttttaaaagtttcaagttg 18935386  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 363 - 438
Target Start/End: Original strand, 2352166 - 2352241
Alignment:
Q  363 aagttgatatcttacgtcactgatgtcaacataagttcatcctttccgtcaaattttgagttaactctgcctaaaa 438  Q
    ||||||||  ||||||| || ||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||    
T  2352166 aagttgatcccttacgtaaccgatgtcagcaaaagttcatcatttccgtcaaattttgagttaactctgtctaaaa 2352241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 330 - 429
Target Start/End: Complemental strand, 3111772 - 3111674
Alignment:
Q  330 tttcatgttggtcccctatgtttagaaagtttcaagttgatatcttacgtcactgatgtcaacataagttcatcctttccgtcaaattttgagttaactc 429  Q
    ||||| |||||||||||| ||||| |||||||||||||| | |||||| | |||||||||   ||| |||||||||||| |||||||||| |||||||||    
T  3111772 tttcaagttggtcccctaagtttaaaaagtttcaagttggt-tcttacattactgatgtctgaatacgttcatcctttctgtcaaattttaagttaactc 3111674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 16049887 - 16049813
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttgat 370  Q
    ||||||||||| | | ||||| ||||||||||| ||||| ||||||||| |||||||  ||||||| ||||||||    
T  16049887 aattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagttttaagttgat 16049813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 368
Target Start/End: Original strand, 18429436 - 18429517
Alignment:
Q  287 ttttggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||||||| ||||||||||| | |  |||| ||||||||||| ||||| ||||||||| ||| |||  ||||||||||||||    
T  18429436 ttttggcttaattgcatgtttgatctcttatgtttattttagttttcaagttggtcccttatattttaaaagtttcaagttg 18429517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 379
Target Start/End: Original strand, 7644797 - 7644865
Alignment:
Q  311 tccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttgatatcttacgt 379  Q
    |||||| ||||||||||| ||| | ||||||||| |||||||  ||||||||||||||||  |||||||    
T  7644797 tccttatgtttattttagtttttaagttggtcccttatgttttaaaagtttcaagttgatcccttacgt 7644865  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 9710219 - 9710291
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    ||||||||||| | | ||||| ||||||||||| ||| | ||||||||| |||||||  ||||||||||||||    
T  9710219 aattgcatgtttgatcccttatgtttattttagtttttaagttggtcccttatgttttaaaagtttcaagttg 9710291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 379
Target Start/End: Original strand, 18548541 - 18548624
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttgatatcttacgt 379  Q
    ||||||||||| | ||||||| ||||||||||||||| | |||||| |  |||||||  ||||||| |||||| | ||||||||    
T  18548541 aattgcatgtttgattccttatgtttattttaggttttaagttggtactttatgttttaaaagttttaagttggtttcttacgt 18548624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 365
Target Start/End: Complemental strand, 4623519 - 4623441
Alignment:
Q  287 ttttggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaag 365  Q
    |||||||| ||||||||||| | | ||||| ||||||||||| ||||| |||| |||  |||||||  |||||||||||    
T  4623519 ttttggcttaattgcatgtttgatcccttatgtttattttagttttcaagttgatcctttatgttttaaaagtttcaag 4623441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 368
Target Start/End: Complemental strand, 7535663 - 7535591
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    ||||||||||| | |||||||  |||||||| ||||||| ||||| ||| |||||||  |||| |||||||||    
T  7535663 aattgcatgtttgattccttatatttatttttggtttcaagttggccccttatgttttaaaagattcaagttg 7535591  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 290 - 471
Target Start/End: Complemental strand, 40744226 - 40744048
Alignment:
Q  290 tggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttgatatcttacgtcactgatgtc 389  Q
    |||||||||||||| || ||  || || ||||||||||||||||| ||||||| | |  ||||| |||| ||||||||| |  ||||||| | |||||||    
T  40744226 tggctaaattgcatttttggacccatacgtttattttaggtttcaagttggtctcttc-gtttaaaaagcttcaagttgttc-cttacgttattgatgtc 40744129  T
Q  390 aacataagttcatcctttccgtcaaattttgagttaactctgcctaaaacattcacgtggcaccctgcaaagttatccacgt 471  Q
    ||||||||||| |||||||||||| |||||||| |||||||| | ||||| | || ||||||| || |||||||||||||||    
T  40744128 aacataagttcgtcctttccgtcatattttgaggtaactctgtcgaaaacgtccatgtggcactct-caaagttatccacgt 40744048  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 48171445 - 48171517
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    ||||||||||| | | ||||| ||||||||||||||||| ||||||||| |||||||  ||||||||||||||    
T  48171445 aattgcatgtttgatcccttatgtttattttaggtttcaggttggtcccttatgttttaaaagtttcaagttg 48171517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 48171846 - 48171777
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaag 365  Q
    ||||||||||| ||| ||||| ||||||||||||||||| ||||||||  |||||||  |||||||||||    
T  48171846 aattgcatgtttggtcccttatgtttattttaggtttcaagttggtcctttatgttttaaaagtttcaag 48171777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 40743901 - 40743976
Alignment:
Q  292 gctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    ||||||||||||||| ||| ||||| ||||| |||| |||| | ||||||||||||  |||||||||||||||||||    
T  40743901 gctaaattgcatgtttggt-ccttacgtttaatttacgttttaagttggtcccctacatttagaaagtttcaagttg 40743976  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 379
Target Start/End: Complemental strand, 33460295 - 33460212
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttgatatcttacgt 379  Q
    ||||||||||| | |  |||| ||||||||||| ||||| ||||||||| |||||||  ||||||||||||||||  |||||||    
T  33460295 aattgcatgtttgatctcttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttgatcccttacgt 33460212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 25622606 - 25622683
Alignment:
Q  291 ggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||| |||||||||||  || ||||| |||||||||||||||||  || ||| | ||||||| |||||||||||||||    
T  25622606 ggcttaattgcatgtttagtcccttatgtttattttaggtttcaaattagtctcttatgttttgaaagtttcaagttg 25622683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 412
Target Start/End: Complemental strand, 16496637 - 16496564
Alignment:
Q  338 tggtcccctatgtttagaaagtttcaagttgatatcttacgtcactgatgtcaacataagttcatcctttccgtc 412  Q
    ||||||| || ||||| ||||||| | |||||| |||||| | | ||| ||||||||||||||||||||||||||    
T  16496637 tggtcccttacgtttaaaaagttt-atgttgatctcttacattattgaagtcaacataagttcatcctttccgtc 16496564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 368
Target Start/End: Complemental strand, 31873014 - 31872937
Alignment:
Q  290 tggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    ||||| |||||||| || | | ||||| ||||||||||| ||||| |||||| ||||||||||  ||||||||||||||    
T  31873014 tggcttaattgcatatttgatcccttatgtttattttagttttcaagttggt-ccctatgttttaaaagtttcaagttg 31872937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 368
Target Start/End: Complemental strand, 42605045 - 42604967
Alignment:
Q  290 tggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    ||||| ||||||||||| | | ||||| ||||||||||| ||||| ||||| ||| || ||||  ||||||||||||||    
T  42605045 tggcttaattgcatgtttgatcccttatgtttattttagttttcaagttggacccttaggttttaaaagtttcaagttg 42604967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 33459893 - 33459970
Alignment:
Q  291 ggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||| ||||||||| | | | ||||| ||||||||||| ||||| ||| ||||| |||||||  ||||||||||||||    
T  33459893 ggcttaattgcatgcttgatcccttatgtttattttagttttcaagttagtcccttatgttttaaaagtttcaagttg 33459970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 367
Target Start/End: Complemental strand, 8718611 - 8718535
Alignment:
Q  291 ggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagtt 367  Q
    |||| ||||||||||| | | || || ||||||||||||||| | ||||||||| ||| |||  |||||||||||||    
T  8718611 ggcttaattgcatgtttgatcccatatgtttattttaggttttaagttggtcccttattttttaaaagtttcaagtt 8718535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 14419823 - 14419879
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgttt 352  Q
    |||||||| ||  |||||||| ||||||||||||||| | ||||||||| |||||||    
T  14419823 aattgcatctttagttccttatgtttattttaggttttaagttggtcccttatgttt 14419879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 280 - 352
Target Start/End: Original strand, 18519304 - 18519376
Alignment:
Q  280 catttaattttggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgttt 352  Q
    ||||| || |||||| ||||||||||||  | ||||| ||||||||||| ||| | ||||||||| |||||||    
T  18519304 cattttatcttggcttaattgcatgttcaataccttatgtttattttagtttttaagttggtcccttatgttt 18519376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 31872711 - 31872783
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    ||||||||||| | | ||||| ||||||||||| ||| | ||||||||| || ||||  ||||||||||||||    
T  31872711 aattgcatgtttgatcccttatgtttattttagttttaaagttggtcccttacgttttaaaagtttcaagttg 31872783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 298 - 426
Target Start/End: Complemental strand, 10307663 - 10307537
Alignment:
Q  298 ttgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttgatatcttacgtcactgatgtcaacataag 397  Q
    ||||||||| ||| ||||| |||||||||| |||| | ||||||||  || ||||| ||||||||||||||||  ||||||| |||||||||| ||||||    
T  10307663 ttgcatgtttggtgccttatgtttattttatgtttgaagttggtcct-tacgtttaaaaagtttcaagttgat-ccttacgttactgatgtcagcataag 10307566  T
Q  398 ttcatcctttccgtcaaattttgagttaa 426  Q
    ||| | |||||| ||||||||| ||||||    
T  10307565 ttcgtgctttccatcaaattttaagttaa 10307537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 26845596 - 26845519
Alignment:
Q  291 ggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||| ||||||||||| ||| ||||| ||||||||||||||| | ||||||||| |||||||  ||||||||||||||    
T  26845596 ggctgaattgcatgtttggtcccttatgtttattttaggttttaagttggtcccttatgttttaaaagtttcaagttg 26845519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 296 - 448
Target Start/End: Complemental strand, 36122106 - 36121956
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttgatatcttacgtcactgatgtcaacata 395  Q
    ||||||||||| ||| ||||| |||||| |||||||||| ||| ||| |||||||||  ||   ||||||||||| ||||| || |||   |||||||||    
T  36122106 aattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgtttctaaccattcaagttgatctcttatgttact-tggtcaacata 36122008  T
Q  396 agttcatcctttccgtcaaattttgagttaactctgcctaaaacattcacgtg 448  Q
    |||||| |||||  |||||| |||  ||||||||| |||||||||| ||||||    
T  36122007 agttcagcctttatgtcaaacttt-cgttaactctacctaaaacatccacgtg 36121956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 43531931 - 43532002
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    ||||||||| ||||| ||||| ||||||||||||||||| ||||||| |||||||||| ||||| ||||||||    
T  43531931 aattgcatgatcggtcccttacgtttattttaggtttcaagttggtctcctatgttta-aaagtctcaagttg 43532002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 368
Target Start/End: Complemental strand, 43971930 - 43971851
Alignment:
Q  289 ttggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||||| ||||||||||| ||| ||||| ||||||||||||||||| ||||||| | | |||||  ||||||||||||||    
T  43971930 ttggcttaattgcatgtttggtcccttatgtttattttaggtttcaagttggtcacatgtgttttaaaagtttcaagttg 43971851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 3217283 - 3217360
Alignment:
Q  291 ggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||| ||||||||||| ||| ||||  || ||| |||||||||||||||||||| |||||||  || |||||||||||    
T  3217283 ggcttaattgcatgtttggtcccttgtgtatatcttaggtttcatgttggtcccttatgttttaaaggtttcaagttg 3217360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 15988663 - 15988587
Alignment:
Q  291 ggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||| ||||||| ||| || |||||| ||||||||| |||||||||||||| || |||||||  ||||||||||||||    
T  15988663 ggcttaattgcaggtttgggtccttatgtttattttcggtttcatgttggt-ccttatgttttaaaagtttcaagttg 15988587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 379
Target Start/End: Original strand, 29526599 - 29526681
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttgatatcttacgt 379  Q
    ||||||||||| | | | ||| ||||||||||| |||||  |||||||| ||||||| ||||||||||||||| | ||||||||    
T  29526599 aattgcatgttggatcctttatgtttattttagttttcaatttggtcccttatgttt-gaaagtttcaagttggtctcttacgt 29526681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 370
Target Start/End: Original strand, 32622216 - 32622295
Alignment:
Q  291 ggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttgat 370  Q
    |||| ||||||||||| | | ||||| ||||||||||| ||||| ||||||| | |||||||  |||||||| |||||||    
T  32622216 ggcttaattgcatgtttgatcccttatgtttattttagttttcaagttggtctcttatgttttaaaagtttccagttgat 32622295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 368
Target Start/End: Complemental strand, 14473948 - 14473867
Alignment:
Q  287 ttttggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||||||| | |||||||||  |  ||||| ||||||||||||||||| || |||||| |||||||  ||||||| ||||||    
T  14473948 ttttggcttagttgcatgtttagccccttacgtttattttaggtttcaagtaggtcccttatgttttaaaagttttaagttg 14473867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 411
Target Start/End: Complemental strand, 43532187 - 43532066
Alignment:
Q  291 ggctaaattgcatgttcggttccttaa-gtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttgatatcttacgtcactgatgtc 389  Q
    |||||||||||||||| | | || ||| ||||| |||||||||||   ||||||| || | ||| || |||| | |||| |  |||| || |||||||||    
T  43532187 ggctaaattgcatgtttgctcccctaacgtttactttaggtttcaaactggtcccttacgattaaaatgtttaatgttggtcccttatgttactgatgtc 43532088  T
Q  390 aacataagttcatcctttccgt 411  Q
    | ||||||||||||||||||||    
T  43532087 agcataagttcatcctttccgt 43532066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 1352827 - 1352871
Alignment:
Q  288 tttggctaaattgcatgttcggttccttaagtttattttaggttt 332  Q
    ||||||| ||||||||||| | ||||||| |||||||||||||||    
T  1352827 tttggcttaattgcatgtttgattccttatgtttattttaggttt 1352871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 3217542 - 3217498
Alignment:
Q  318 gtttattttaggtttcatgttggtcccctatgtttagaaagtttc 362  Q
    |||||||| |||||||| |||||||||||||||||  ||||||||    
T  3217542 gtttatttcaggtttcaagttggtcccctatgttttaaaagtttc 3217498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 3446 - 3369
Alignment:
Q  291 ggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||| ||||||||||| | | ||||| ||||||||||| ||||| ||||||||| |||||||  ||||||||||||||    
T  3446 ggcttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttg 3369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 368
Target Start/End: Complemental strand, 24188296 - 24188207
Alignment:
Q  279 tcatttaattttggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    ||||||| |||||||| ||||||||||| | |  |||| |||||| |||||||||| ||||||||| |||||||  | ||||||||||||    
T  24188296 tcatttatttttggcttaattgcatgtttgatcgcttatgtttatattaggtttcaagttggtcccttatgttttaagagtttcaagttg 24188207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 22566301 - 22566378
Alignment:
Q  291 ggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||| ||||||||||| | | ||||| ||||||||||| ||| |  |||||||| |||||||  ||||||||||||||    
T  22566301 ggcttaattgcatgtttgatcccttatgtttattttagtttttaaattggtcccttatgttttaaaagtttcaagttg 22566378  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 7460951 - 7460883
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaa 364  Q
    ||||||||||| | | ||||| ||||||||||| ||||| ||||||| | |||||||  ||||||||||    
T  7460951 aattgcatgtttgatcccttatgtttattttagttttcaagttggtcacttatgttttaaaagtttcaa 7460883  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 22793320 - 22793376
Alignment:
Q  312 ccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    ||||| ||||||||||||||||| ||||||||| |||||||  ||||||||||||||    
T  22793320 ccttatgtttattttaggtttcaagttggtcccttatgttttaaaagtttcaagttg 22793376  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 6611635 - 6611686
Alignment:
Q  317 agtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||||||||||||||||| ||||||||| |||||||  ||||||||||||||    
T  6611635 agtttattttaggtttcaggttggtcccttatgttttaaaagtttcaagttg 6611686  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 22793677 - 22793606
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagtt 367  Q
    ||||||||||| | | ||||| ||||||||||||||||| ||||||||| || ||||  |||||||||||||    
T  22793677 aattgcatgtttgatcccttatgtttattttaggtttcaagttggtcccttacgttttaaaagtttcaagtt 22793606  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 368
Target Start/End: Original strand, 17342913 - 17342963
Alignment:
Q  318 gtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    ||||||||||||||||| ||||||||| |||||||  ||| ||||||||||    
T  17342913 gtttattttaggtttcaagttggtcccttatgttttaaaaatttcaagttg 17342963  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 368
Target Start/End: Complemental strand, 34829979 - 34829893
Alignment:
Q  282 tttaattttggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    |||||||||| || ||||||||||| | |  |||| ||||||||||||||| | ||||||| | |||||||  ||||||||| ||||    
T  34829979 tttaattttgtcttaattgcatgtttgatctcttatgtttattttaggttttaagttggtctcttatgttttaaaagtttcatgttg 34829893  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 29674867 - 29674923
Alignment:
Q  312 ccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagttg 368  Q
    ||||| ||||| ||||||||||| ||||||||| ||| |||  ||||||||||||||    
T  29674867 ccttatgtttaatttaggtttcaagttggtcccttatattttaaaagtttcaagttg 29674923  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 25508214 - 25508143
Alignment:
Q  296 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaagtt 367  Q
    ||||||||||| ||| ||||||||| ||||||||||| | |||| |||| |||||||  |||||||||||||    
T  25508214 aattgcatgtttggtcccttaagttgattttaggttttaagttgctcccttatgttttaaaagtttcaagtt 25508143  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 47490 - 47417
Alignment:
Q  291 ggctaaattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctatgtttagaaagtttcaa 364  Q
    |||| ||||||||||| ||| ||||| ||||||||||||||| | ||||||| | |||||||  ||||||||||    
T  47490 ggcttaattgcatgtttggtcccttatgtttattttaggttttaagttggtcgcttatgttttaaaagtttcaa 47417  T

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