View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7985_low_5 (Length: 456)
Name: NF7985_low_5
Description: NF7985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7985_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 39 - 439
Target Start/End: Original strand, 24990922 - 24991322
Alignment:
| Q |
39 |
ttactagttaaaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaa |
138 |
Q |
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| T |
24990922 |
ttactagttaaaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaa |
24991021 |
T |
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| Q |
139 |
gttgcttcccatccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgcc |
238 |
Q |
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| T |
24991022 |
gttgcttcccatccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgcc |
24991121 |
T |
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| Q |
239 |
acagaatgcatgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcgttttaatgtgcaaataattatattcttctattatttt |
338 |
Q |
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| T |
24991122 |
acagaatgcatgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcattttaatgtgcaaataattatattcttctattatttt |
24991221 |
T |
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| Q |
339 |
taggtgataaagctggataatttcatcactcacgagcttccctttgacgagataaaccaagccttcgatcttttgattgccgggaagtcattgagatgtg |
438 |
Q |
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| T |
24991222 |
taggcgataaagttggataatttcatcactcacgagcttccctttgatgagataaaccaagccttcaatcttttgattgccgggaagtcattgagatgtg |
24991321 |
T |
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| Q |
439 |
t |
439 |
Q |
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| T |
24991322 |
t |
24991322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 49 - 437
Target Start/End: Original strand, 24994607 - 24994989
Alignment:
| Q |
49 |
aaaattgtgcactatcaaatttcatgtaaaattttgtataatgtagggttggggattgactgtactattgggaattcatggatcaccaaagttgcttccc |
148 |
Q |
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|||| ||||||||||||||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |
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| T |
24994607 |
aaaactgtgcactatcaaattttatgtctaatt--gtataatgtagggttggggattgactatactattgggaattcatgcatcaccaaagttacttcct |
24994704 |
T |
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| Q |
149 |
atccacccaatggagctctttgatggtcgcagaatcgaaggttcagtgttcggaggtttcaaaggcaaaagtcaattgcctaatcttgccacagaatgca |
248 |
Q |
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| T |
24994705 |
ctccacccaatggagctctttgatggccgcaaaatcgaaggatcggtctttggaggtttcaaaggcaaaagtcaattgcctaatcttgccacagaatgca |
24994804 |
T |
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| Q |
249 |
tgaaaggggtaaatgatcatcactacttgcaaaaactcaaattatgcgacgcgttttaatgtgcaaataattatattcttctattatttttaggtgataa |
348 |
Q |
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| T |
24994805 |
tgaaaggggt-aatgatcatcacta---gcaaaaactcaaattatgcgatgcgttttagtgtccaagtaattatattcttctattatttttaggcgataa |
24994900 |
T |
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| Q |
349 |
agctggataatttcatcactcacgagcttccctttgacgagataaaccaagccttcgatcttttgattgccgggaagtcattgagatgt |
437 |
Q |
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| T |
24994901 |
agttggatgatttcatcactcacgaacttccctttgacgagataaacaaagccttcgatcttttgattgccgggaagtcactgagatgt |
24994989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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