View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7985_low_6 (Length: 445)
Name: NF7985_low_6
Description: NF7985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7985_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 170 - 371
Target Start/End: Complemental strand, 4611198 - 4610997
Alignment:
| Q |
170 |
caaattgttgttctagtgtcagacatttcaactatttagaagtaa-tttgaaactgttcccaatctgcaatttgatgtcccaaagattcccaatcttttt |
268 |
Q |
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| T |
4611198 |
caaactgttgttctagtgtcagacatttcaactatttagaagtaaatttgaaactattaccaatctgcaatttgatgtcccaaagattcccaatctttt- |
4611100 |
T |
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| Q |
269 |
atgtagcattgaacatttcaagttgtttctcaatt-gtttttagtgcattccataggaaataacttgacaaaggaaaccattagaatgaatcatgattta |
367 |
Q |
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| T |
4611099 |
atgtagcattgaacatttcaagt-gttgctcattttgtttttagtgcattccataggaaataacttgacaaaggaaaccattaaaataaatcatgattta |
4611001 |
T |
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| Q |
368 |
ccat |
371 |
Q |
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|||| |
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| T |
4611000 |
ccat |
4610997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 430
Target Start/End: Complemental strand, 4610966 - 4610911
Alignment:
| Q |
375 |
ggctcgcgatacacattagaaattcgtattgattcgatctagttctgcattgaaat |
430 |
Q |
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| T |
4610966 |
ggctcgcgatacacactagaaattcgtattgatttgatccagttttgcattgaaat |
4610911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 4611501 - 4611449
Alignment:
| Q |
54 |
tctgtccgtattcgtgtttcatagacccaaaccaaacgttttggcttgctttg |
106 |
Q |
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| T |
4611501 |
tctgtctgtatccgtgcttcaaagacccaaaccaaacgttttggcttgctttg |
4611449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5462708 - 5462680
Alignment:
| Q |
1 |
tttctcaaattattaacggtgtcagtgtc |
29 |
Q |
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| T |
5462708 |
tttctcaaattattaacggtgtcagtgtc |
5462680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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