View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7985_low_7 (Length: 427)
Name: NF7985_low_7
Description: NF7985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7985_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 52764129 - 52764386
Alignment:
| Q |
12 |
aagaatataccaattcatgttttgtttaacttactggnnnnnnn-tgtaagcaagcttagtgcttcacccacatccacaatgcacaaagaagtaaaacac |
110 |
Q |
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| T |
52764129 |
aagaatataccaattcatgtattgtttaacttactggaaaaagaatgtaagcaagcttagtgcttcacccacatccacagtgcacaaagaagtaaaacac |
52764228 |
T |
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| Q |
111 |
ataattttagccaaaacaaaagcactttcctcatctcgtaagaacataccgattcatgttttgtttaactcactggaaaaggaggaaatgtattgcattt |
210 |
Q |
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| T |
52764229 |
ataattttagccaaaacaaaagcactttcctcatcttgtaagaacataccgattcatgttttgtttaactcactggaaaaagaggaaatgtattgcattt |
52764328 |
T |
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| Q |
211 |
gcatcgaccatgttatggacgttgctgacaaacttgagctaaatcgattgttgtcaag |
268 |
Q |
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| T |
52764329 |
gcatcgaccatgttatggacgttgctgacaaacttgagctaaatcgattgttgtcaag |
52764386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 263 - 392
Target Start/End: Original strand, 52764753 - 52764882
Alignment:
| Q |
263 |
gtcaagtgaaggttttgacctgctgacccataagtggaaggctgctctgtaaccgttattgtgtgttgcgaatttcgaatcaagttggatcattctagcg |
362 |
Q |
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| T |
52764753 |
gtcaagtgaaggttttgacctactgacccataagtggaaggctgctctgtaaccgttgttgtgtgttgcgaatttcgaatcaagttggatcattctagcg |
52764852 |
T |
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| Q |
363 |
tcctatcctccatcaaatgatatgctctct |
392 |
Q |
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| T |
52764853 |
tcctatcctccatcaaatgatatgctctct |
52764882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 52764036 - 52764169
Alignment:
| Q |
56 |
tgtaagcaagcttagtgcttcacccacatccacaatgcacaaagaagtaaaacacataattttagccaaaacaaaagcactttcctcatctcgtaagaac |
155 |
Q |
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| T |
52764036 |
tgtaagcaagtttagcgcttcaccctcgtccacggtgcacaaaagagtaaaacacatatttttagccaaaacaaaagtaccttcct-atctcgtaagaat |
52764134 |
T |
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| Q |
156 |
ataccgattcatgttttgtttaactcactggaaaa |
190 |
Q |
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| T |
52764135 |
ataccaattcatgtattgtttaacttactggaaaa |
52764169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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