View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7985_low_8 (Length: 380)
Name: NF7985_low_8
Description: NF7985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7985_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 41754807 - 41755150
Alignment:
| Q |
17 |
atcttccagcaggtttaccaggaaatgtgattccataaggttgcttgtacgatggtgagcccacaaaatttcctgtgtcagcatatgaatctccaaatac |
116 |
Q |
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| T |
41754807 |
atcttccaacaggtttaccaggaaatgtgattccataaggttgcttgtacgatggtgagcccacaaaatttcctgtgtcagcatatgaatctccaaatac |
41754906 |
T |
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| Q |
117 |
aaacaattttacagagctgctgttgttgtcgtatacaccatatgatttcttagtcccttcaactacttctgtaacatttgcattaacttatgtcacatga |
216 |
Q |
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| T |
41754907 |
aaacaattttacagagttgctgtt---gtcgtatacaccatatgatttcttagtcccttcaactacttctgtaacatttgcattaacttatgtcacatga |
41755003 |
T |
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| Q |
217 |
tttcgaaacaataaaaatgaataaaccaaagacatttaattgaattattgtgatgttggctatgaatatatgcgttaacacctgataaaaagacaaggag |
316 |
Q |
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| T |
41755004 |
tttcgaaacaataaaaatgaataaaccaaagacatttaattgaattattatgatgttggctatgaatatatgcgttaatacctgataaaatgaaaaggag |
41755103 |
T |
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| Q |
317 |
aaaaagcaaagggagaagcatgattatgagttgctttgccaatgatg |
363 |
Q |
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| T |
41755104 |
aaaaagcaaagggagaagcatgattatgagttgctttgccattgatg |
41755150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 41760717 - 41760936
Alignment:
| Q |
17 |
atcttccagcaggtttaccaggaaatgtgattccataaggttgcttgtacgatggtgagcccacaaaatttcctgtgtcagcatatgaatctccaaatac |
116 |
Q |
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| T |
41760717 |
atcttccagcaggtttaccaggaaatgtgattccataaggttgcttgtacgatggtgagcccataaaattgcctgtatcagcatatgagtctccaaatac |
41760816 |
T |
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| Q |
117 |
aaacaattttacagagctgctgttgttgtcgtatacaccatatgatttcttagtcccttcaactacttctgtaacatttgcattaacttatgtcacatga |
216 |
Q |
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| T |
41760817 |
aaacaattttacaga------gtttttgtcatacacaccatatgatttcttagtcccttcgaccacttctgtaaaatttgcattaatttatgtcacacaa |
41760910 |
T |
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| Q |
217 |
tttcgaaacaataaaaatgaataaac |
242 |
Q |
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| T |
41760911 |
tagaaaaccaataaaaatgaataaac |
41760936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 41749211 - 41749311
Alignment:
| Q |
19 |
cttccagcaggtttaccaggaaatgtgattccataaggttgcttgtacgatggtgagcccacaaaatttcctgtgtcagcatatgaatctccaaatacaa |
118 |
Q |
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| T |
41749211 |
cttccagaaggtttaccaggaaaagtgattccataaggaagcttatatgatggtgaggtaaagtaatttcctgtatcaacatatgagtctccaaatacaa |
41749310 |
T |
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| Q |
119 |
a |
119 |
Q |
| |
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| |
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| T |
41749311 |
a |
41749311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 363
Target Start/End: Original strand, 41760951 - 41761068
Alignment:
| Q |
239 |
aaaccaaagacatttaattgaattattgtgatgttggctatgaat-atatgcgttaacacctgataaaaagacaaggagaaaaagcaaagggagaagcat |
337 |
Q |
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| T |
41760951 |
aaaccaaagacatttaattgaattat---gatgttggctcttaatgatat-----aatacctgataaaatgaaaagaagaaggagcaaaggaagaagcat |
41761042 |
T |
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| Q |
338 |
gattatgagttgctttgccaatgatg |
363 |
Q |
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| T |
41761043 |
gattatgagttgcttcgccattgatg |
41761068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 42225933 - 42225971
Alignment:
| Q |
88 |
cctgtgtcagcatatgaatctccaaatacaaacaatttt |
126 |
Q |
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| T |
42225933 |
cctgtgtctgcatatgaatctccaaagacaaacaatttt |
42225971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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