View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7985_low_9 (Length: 344)
Name: NF7985_low_9
Description: NF7985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7985_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 328
Target Start/End: Complemental strand, 42496191 - 42495890
Alignment:
| Q |
5 |
agtttggtgttcaactttaaaaacggatggagaaactgtggttatttttgtatttttagaatatcaatgaataacaaagaataaaacaataaacttgcta |
104 |
Q |
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| T |
42496191 |
agtttggtattcaactttaaaaacggatggagaaactgtggttgtttttgtatttcta--------------------gaataaaacaataaacttgcta |
42496112 |
T |
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| Q |
105 |
tggaatttctacaagttattgttttctaggaagaaggtttcatgtctagctagctgacccactttcttcaagcaactcaatagtatatatatttgccgtg |
204 |
Q |
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| T |
42496111 |
tg--atttctacaagttattgttttctaggaagaaggtttcatgtctagctagctgacccactttcttcaagcaactcaatagtatatatatttgccgtg |
42496014 |
T |
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| Q |
205 |
aatatcaagaatttaactctaagcaatttagaccccgacataatttagtgtgcctaaacctatgattgcgaaattcttatccagatggaagttgggtttc |
304 |
Q |
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| T |
42496013 |
aatatcaagaatttaactctaagcaatttagaccccgacataatttagtgtgcctaaacctatgattgcgaaattcttatccagatggaagttgggtttc |
42495914 |
T |
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| Q |
305 |
agaatgatcgtcactagccaaaac |
328 |
Q |
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| T |
42495913 |
agaatgatcgtcactagccaaaac |
42495890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 134 - 328
Target Start/End: Complemental strand, 42493903 - 42493700
Alignment:
| Q |
134 |
gaagaaggtttcatgtctagctagctgacccactttcttcaagcaactcaatagtatatatatttgccgtgaatatcaagaatttaactct------aag |
227 |
Q |
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| T |
42493903 |
gaagaaggtttcatgcctagctagctgacc-actttcttcaagcaactcaatagtatat----ttgcactgatcatcaataatttaactctctgattaag |
42493809 |
T |
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| Q |
228 |
caatttagaccccgacataatttagtgtgcctaaacctatgattgcgaaattcttatccagatgg--------aagttgggtttcagaatgatcgtcact |
319 |
Q |
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| T |
42493808 |
caattttgaccccgacataatggagtgtgcctaaacctatgattatgaaattcttatccagatgggacttaacaagttgagtttcagaatgatcgtcacg |
42493709 |
T |
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| Q |
320 |
agccaaaac |
328 |
Q |
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| T |
42493708 |
agcaaaaac |
42493700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 42494375 - 42494303
Alignment:
| Q |
5 |
agtttggtgttcaactttaaaaacggatggagaaactgtggttatttttgtatttttagaatatcaatgaataa |
78 |
Q |
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| T |
42494375 |
agtttggtattcaacttcaaaaacggatg-agaaactgtggttgtttttgtatttctcaaatatcaaagaataa |
42494303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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