View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7986_low_2 (Length: 255)
Name: NF7986_low_2
Description: NF7986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7986_low_2 |
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| [»] scaffold0013 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 103263 - 103036
Alignment:
| Q |
20 |
ggttgcttcccaaccaatcaaagagaccaagtatctataggtaaatgatacattcaaattagtaacataaatattttcggttaaatattaatattgcata |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103263 |
ggttgcttcccaaccaatcaaagagaccaagtatctataggtaaatgatacattcaaattagtaacataaatattttcggttaaatattaatattgcata |
103164 |
T |
|
| Q |
120 |
gaaatgaatggtaggtaccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103163 |
gaaatgaatggtaggtaccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagca |
103064 |
T |
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| Q |
220 |
ttgtcttgacctccatcaggttcttctc |
247 |
Q |
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||||||||||| ||||||||| |||||| |
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| T |
103063 |
ttgtcttgaccgccatcaggtccttctc |
103036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 126 - 247
Target Start/End: Complemental strand, 162337 - 162216
Alignment:
| Q |
126 |
aatggtaggtaccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtct |
225 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
162337 |
aatggtagctaccgaaagccaagttttcccccatgaaggtatacgtgttacaccaccgtgatcacgaatccagtttctggctctagcacaagcattgtct |
162238 |
T |
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| Q |
226 |
tgacctccatcaggttcttctc |
247 |
Q |
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||||||||||||||| |||||| |
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| T |
162237 |
tgacctccatcaggtccttctc |
162216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 162534 - 162459
Alignment:
| Q |
20 |
ggttgcttcccaaccaatcaaagagaccaagtatctataggtaaatgatac---attcaaattagtaacataaata |
92 |
Q |
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| T |
162534 |
ggttgcttcccgaccaatcatatacaccaagtatctatacgtaaaggatacattattcaaataagtaacataaata |
162459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 13052048 - 13051947
Alignment:
| Q |
135 |
taccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtcttgacctcca |
234 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
13052048 |
taccgaaagccaagtttttccccatgaaggtatatgcgttacaccaccgtgatcacgaatccagtttcttgctcttgcacaagcattgtcttgacctcca |
13051949 |
T |
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| Q |
235 |
tc |
236 |
Q |
| |
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|| |
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| T |
13051948 |
tc |
13051947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 93227 - 93331
Alignment:
| Q |
135 |
taccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtcttgacctcca |
234 |
Q |
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|||||||||||| |||||||||||||||||||||| ||| |||||||| || | |||||||||| ||| ||||||||||||||||||| |||||| ||| |
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| T |
93227 |
taccgaaagccatgtttttccccatgaaggtatatgtgttacaccaccatgaacacgaatccagtgtcttgctctagcacaagcattgttttgaccgcca |
93326 |
T |
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| Q |
235 |
tcagg |
239 |
Q |
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||||| |
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| T |
93327 |
tcagg |
93331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 93103 - 93171
Alignment:
| Q |
20 |
ggttgcttcccaaccaatcaaagagaccaagtatctataggtaaatgatacattcaaattagtaacata |
88 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||| |||| ||||||||||| |||||| |
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| T |
93103 |
ggttgcttccactccaatcaaaaagaccaagtatctataggtaaaagatatattcaaattagaaacata |
93171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 12138115 - 12138215
Alignment:
| Q |
135 |
taccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtcttgacctcca |
234 |
Q |
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||||||||||||||||||||||||||||||||| | ||| |||||||| || | ||||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
12138115 |
taccgaaagccaagtttttccccatgaaggtatctgtgtcacaccaccatgatcatgaatccactttcttgctcttgcacaagcattgtcttgacctcca |
12138214 |
T |
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| Q |
235 |
t |
235 |
Q |
| |
|
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| T |
12138215 |
t |
12138215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 5670850 - 5670950
Alignment:
| Q |
135 |
taccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtcttgacctcca |
234 |
Q |
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|
||||||||||||| |||||||||||||||||| ||||| |||||||| || | ||||||| ||||| ||| ||||||||||||| |||| ||||||| |
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| T |
5670850 |
taccgaaagccaaatttttccccatgaaggtacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca |
5670949 |
T |
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| Q |
235 |
t |
235 |
Q |
| |
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| T |
5670950 |
t |
5670950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 5692596 - 5692696
Alignment:
| Q |
135 |
taccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtcttgacctcca |
234 |
Q |
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|
||||||||||||| ||||||||||||||||| ||||| |||||||| || | ||||||| ||||| ||| ||||||||||||| |||| ||||||| |
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| T |
5692596 |
taccgaaagccaaaattttccccatgaaggtacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca |
5692695 |
T |
|
| Q |
235 |
t |
235 |
Q |
| |
|
| |
|
|
| T |
5692696 |
t |
5692696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 235
Target Start/End: Original strand, 5722940 - 5723040
Alignment:
| Q |
135 |
taccgaaagccaagtttttccccatgaaggtatatatgtgacaccaccgtgtgcccgaatccagtttctggctctagcacaagcattgtcttgacctcca |
234 |
Q |
| |
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|||||||||||| ||||||||||||||| | ||||| |||||||| || | ||||||| ||||| ||| ||||||||||||| |||| ||||||| |
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| T |
5722940 |
taccgaaagccagatttttccccatgaagacacgtatgtcacaccaccatgatcatgaatccattttcttgctttagcacaagcattttctttacctcca |
5723039 |
T |
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| Q |
235 |
t |
235 |
Q |
| |
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| |
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| T |
5723040 |
t |
5723040 |
T |
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