View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_high_1 (Length: 696)
Name: NF7987_high_1
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 6667970 - 6668238
Alignment:
| Q |
18 |
ctttcaggtttctctttttacacatttcgtttactctttcacgtttcttcatttcatatttgaattcctctatttgtgatttaggttaacatattgaaaa |
117 |
Q |
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| T |
6667970 |
ctttcaggtttctctttttacacatttcgtttactctttcacgtttcttcatttcatatttgaattcctctatttgtgatttaggttagcatattgaaaa |
6668069 |
T |
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| Q |
118 |
acgaaacgaatatatggtgattgatatttagatcatcacaggggagagagatccgtagcggagagcggtgtcggtattggaagctactaatctttggtga |
217 |
Q |
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| T |
6668070 |
acgaaacgaatatatggtgattgatatttagatcatcacaggggagagagatccgtagcggagagcggtgtcggtattggaagctactaatctttggtga |
6668169 |
T |
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| Q |
218 |
ttgagattttttcttcaatttgcttgatgaaatttattaaaaaatgattttcatttttagaaaagatgg |
286 |
Q |
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| T |
6668170 |
ttgagattttttcttcaatttgcttgatgaaatttattaaaaaatgattttcatttttagaaaagatgg |
6668238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 416 - 684
Target Start/End: Original strand, 6668344 - 6668611
Alignment:
| Q |
416 |
ggagctttgcatgttgtttgtgatatgtgaattgctgaatacttgaattgaaaaatttcttttgttgattgtttgctatatacttttaagagattttcag |
515 |
Q |
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| T |
6668344 |
ggagctttgcatgttgtttgtgatatgtgaattgctgaatacttgaattaaaaaatttcttccgttgattgtttgcaatatacttttcagagattttcag |
6668443 |
T |
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| Q |
516 |
tagtttaacccttaattttaatttcaacttttaggctattaatcgatgaagaacaaagcttgaatgttctgaaggtggtgtcatgcgataactaacaggt |
615 |
Q |
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| T |
6668444 |
tagtttaacccttaattttaatttcaacttttaggctattaaataatgaagaac-aagcttgaatgctctgaaggtggtgtcatgcgataactaacaggt |
6668542 |
T |
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| Q |
616 |
gtagataatgtatgtatctctctgcatcagtttgttgttattttctccataattatcctcttccatgat |
684 |
Q |
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| T |
6668543 |
gtagataatgtatatatctctctgcatcagtttgttgttattttctccataattatcctcttccatgat |
6668611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 12529723 - 12529663
Alignment:
| Q |
224 |
ttttttcttcaatttgcttgatgaaatttattaaaaaa--tgattttcatttttagaaaag |
282 |
Q |
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| T |
12529723 |
ttttttgttcaatttgattgatgaaatttaataaaaaaactgttgttcatttttagaaaag |
12529663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 350
Target Start/End: Original strand, 6668249 - 6668277
Alignment:
| Q |
322 |
tttcactttatttaatgttgtagcttcag |
350 |
Q |
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| T |
6668249 |
tttcactttatttaatgttgtagcttcag |
6668277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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