View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7987_high_10 (Length: 459)
Name: NF7987_high_10
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_high_10 |
 | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 26 - 443
Target Start/End: Original strand, 4389747 - 4390162
Alignment:
| Q |
26 |
aagtaatgccttgtctcaccaaatctgctccttccgtaaacttatgcaatagagaaatgagagaatccctcgaataaataaaacttgtaannnnnnnacc |
125 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4389747 |
aagtaatgccttgtctcaccaaatctgttccttccgtaaacttatgcaatagagaaatgagagaatccctcgaataaataaaacttgtaatttttttacc |
4389846 |
T |
|
| Q |
126 |
ctttgtaattatctcttcataaacaggtattttcttctcgtaatcttccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtc |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4389847 |
ctttgtaattatctcttcataaacaggtattttcttctcgtaatcttccaacatcatctcaatgcagtgtgtc--acaaggtgtccaatacaacctagtc |
4389944 |
T |
|
| Q |
226 |
ctcttctccatcaacatctcaccagcagctctgaaataagccgtattatccgtcacaacttgaagaacattttcttcaccaacctcttcaacaacatcat |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4389945 |
ctcttctccatcaacatctcaccagcagctctgaaatatgccgtattatccgtcacaacttgaacaacattttcttcaccaacctcttcaacaacatcat |
4390044 |
T |
|
| Q |
326 |
ccatcatcttaaacaatttctcaggcgattccaacatatctgacgcatcaatcgacttcaaaaagaacgtcccattcaaactattcaccaacaagttcaa |
425 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
4390045 |
ccatcatcttaaacaatttctcagacgattccaacatatcggacgcatcaaccgacttcaaaaagaacatcccattcacactattcactaacaagttcaa |
4390144 |
T |
|
| Q |
426 |
tatactcctcttcttctt |
443 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4390145 |
tatactcctcttcttctt |
4390162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 26 - 443
Target Start/End: Original strand, 4377062 - 4377479
Alignment:
| Q |
26 |
aagtaatgccttgtctcaccaaatctgctccttccgtaaacttatgcaatagagaaatgagagaatccctcgaataaataaaacttgtaannnnnnnacc |
125 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| |
|
|
| T |
4377062 |
aagtaatgccttgtctcaccaaatctattccttccgtaaacttatgcaatagagaaatgagagaatccctcgaagaaataaaatctgtaatttttttacc |
4377161 |
T |
|
| Q |
126 |
ctttgtaattatctcttcataaacaggtattttcttctcgtaatcttccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4377162 |
ctttgtaattatctcttcataaacaggtatctttttctcataatcttccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtc |
4377261 |
T |
|
| Q |
226 |
ctcttctccatcaacatctcaccagcagctctgaaataagccgtattatccgtcacaacttgaagaacattttcttcaccaacctcttcaacaacatcat |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
4377262 |
ctcttctccatcaacatctcaccagcagctttgaaataagtcgtattatccgttacaacttgaacaacattttcttccccaacctcttcaacaacatcat |
4377361 |
T |
|
| Q |
326 |
ccatcatcttaaacaatttctcaggcgattccaacatatctgacgcatcaatcgacttcaaaaagaacgtcccattcaaactattcaccaacaagttcaa |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
4377362 |
ccatcatcttaaacaatttctcaggcgattccatcatatctgacgcatcaaccgacttcaaaaagaatgtcccattcaaactattcaccaacaaattcaa |
4377461 |
T |
|
| Q |
426 |
tatactcctcttcttctt |
443 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4377462 |
tatactcctcttcttctt |
4377479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 22 - 443
Target Start/End: Original strand, 4384631 - 4385052
Alignment:
| Q |
22 |
caacaagtaatgccttgtctcaccaaatctgctccttccgtaaacttatgcaatagagaaatgagagaatccctcgaataaataaaacttgtaannnnnn |
121 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
4384631 |
caacatgtaatgccttgtctcaccaaatctattccttgcgtaaacttatgcaatagagaaatgagagaagccctcgaataaataaaggttgtaatttttt |
4384730 |
T |
|
| Q |
122 |
naccctttgtaattatctcttcataaacaggtattttcttctcgtaatcttccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacct |
221 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4384731 |
taccctttgtaattatctcttcatgaacaggtatcttcttctcataatcttccaacatcctctcaatgcagtgtgtcgcacaaggtgtccaatacaacct |
4384830 |
T |
|
| Q |
222 |
agtcctcttctccatcaacatctcaccagcagctctgaaataagccgtattatccgtcacaacttgaagaacattttcttcaccaacctcttcaacaaca |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
4384831 |
agtcctcttctccatcaacatctcaccagcagctttgaaataagccgtattatccgtgacaacttgaacaacattttcttccccaacctcttcaacaaca |
4384930 |
T |
|
| Q |
322 |
tcatccatcatcttaaacaatttctcaggcgattccaacatatctgacgcatcaatcgacttcaaaaagaacgtcccattcaaactattcaccaacaagt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4384931 |
tcatccatcatcttaaacaatttctcagacgattccaacatatctgacgcatcaaccgactttaaaaagaacgtcccattcacactattcaccaacaagt |
4385030 |
T |
|
| Q |
422 |
tcaatatactcctcttcttctt |
443 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
4385031 |
tcaatatactcctcttcttctt |
4385052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 125 - 392
Target Start/End: Complemental strand, 4414707 - 4414444
Alignment:
| Q |
125 |
cctttgtaattatctcttcataaacaggtattttcttctcgtaatcttccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagt |
224 |
Q |
| |
|
||||||||||| ||||||||| || ||||| |||||| || |||||||| ||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
4414707 |
cctttgtaattgtctcttcatgaatgggtat---cttctcatagtcttccaatatcatctcaattgtgtgtgttgcacaaggtgtccaatacaacctagt |
4414611 |
T |
|
| Q |
225 |
cctcttctccatcaacatctcaccagcagctctgaaataagccgtattatccgtcacaacttgaagaacattttcttcaccaacctcttcaacaacatca |
324 |
Q |
| |
|
||| ||| ||||| |||||||||||||| || || | || | ||||| || ||||||| ||| | |||||||||||| ||||||||||| |||| ||| |
|
|
| T |
4414610 |
ccttttcaccatctacatctcaccagcaactttgtagtaggttgtattgtctgtcacaatttggacaacattttcttc-ccaacctcttctacaatttca |
4414512 |
T |
|
| Q |
325 |
tccatcatcttaaacaatttctcaggcgattccaacatatctgacgcatcaatcgacttcaaaaagaa |
392 |
Q |
| |
|
|||||||||||||| | ||| | ||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
4414511 |
tccatcatcttaaagagtttgttaggtgattccaacatattcgacgcatcaacggacttcaaaaagaa |
4414444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 185 - 392
Target Start/End: Original strand, 4360269 - 4360476
Alignment:
| Q |
185 |
caatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctctgaaataagccgtattatccgtcacaac |
284 |
Q |
| |
|
||||||| ||||| || |||||||||||||||| ||||||||| ||| ||||||||||| || | |||||| | || | |||| ||||| ||||| |
|
|
| T |
4360269 |
caatgcaatgtgttgcgcaaggtgtccaatacagcctagtccttttcgccatcaacatcccagcggcagctacatagtatggtgtatattccgttacaac |
4360368 |
T |
|
| Q |
285 |
ttgaagaacattttcttcaccaacctcttcaacaacatcatccatcatcttaaacaatttctcaggcgattccaacatatctgacgcatcaatcgacttc |
384 |
Q |
| |
|
|| | |||||||||||| ||||||||||||||||| ||||||||||| ||||| | |||||||| ||||||||||||||| ||||||||||| | |||| |
|
|
| T |
4360369 |
gtggacaacattttcttccccaacctcttcaacaacgtcatccatcattttaaagagtttctcagacgattccaacatatcagacgcatcaatagtcttc |
4360468 |
T |
|
| Q |
385 |
aaaaagaa |
392 |
Q |
| |
|
|||||||| |
|
|
| T |
4360469 |
aaaaagaa |
4360476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 293 - 392
Target Start/End: Original strand, 4365773 - 4365872
Alignment:
| Q |
293 |
cattttcttcaccaacctcttcaacaacatcatccatcatcttaaacaatttctcaggcgattccaacatatctgacgcatcaatcgacttcaaaaagaa |
392 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
4365773 |
cattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttctcaggcgattccaacatatcagacgcatcaatagacttcaaaaagaa |
4365872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 173 - 392
Target Start/End: Original strand, 4370053 - 4370272
Alignment:
| Q |
173 |
ccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctctgaaataagccgtatt |
272 |
Q |
| |
|
|||| ||||||| |||||| | ||| |||||||| |||||||||| |||||| || ||||||||||||||||||||| |||||||| | | | ||||| |
|
|
| T |
4370053 |
ccaaaatcatctgaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtatt |
4370152 |
T |
|
| Q |
273 |
atccgtcacaacttgaagaacattttcttcaccaacctcttcaacaacatcatccatcatcttaaacaatttctcaggcgattccaacatatctgacgca |
372 |
Q |
| |
|
|||||||||| ||| | |||||||||||| |||||||||||||||| | |||| ||| ||| | ||| |||||||||||||||||||| | ||| |
|
|
| T |
4370153 |
gtccgtcacaatttggacaacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgca |
4370252 |
T |
|
| Q |
373 |
tcaatcgacttcaaaaagaa |
392 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
4370253 |
tcaatagacttcaaaaagaa |
4370272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 178 - 338
Target Start/End: Complemental strand, 5725643 - 5725483
Alignment:
| Q |
178 |
atcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctctgaaataagccgtattatccg |
277 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| | | || | | | | |||| |
|
|
| T |
5725643 |
atcatctcaatgcaccgtgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatctcaccagccttttcatagtatgttgcactgtccg |
5725544 |
T |
|
| Q |
278 |
tcacaacttgaagaacattttcttcaccaacctcttcaacaacatcatccatcatcttaaa |
338 |
Q |
| |
|
|||||| ||| | |||||||||||| ||||| |||||||||| ||||||||||||||||| |
|
|
| T |
5725543 |
tcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaa |
5725483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 5725748 - 5725711
Alignment:
| Q |
70 |
tgcaatagagaaatgagagaatccctcgaataaataaa |
107 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
5725748 |
tgcaatagagaaatgagagaatcacttgaataaataaa |
5725711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 338
Target Start/End: Complemental strand, 15658882 - 15658701
Alignment:
| Q |
157 |
ttcttctcgtaatcttccaacatcatctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctc |
256 |
Q |
| |
|
|||||||| |||| |||||||||| ||||| || || | ||||| |||||||||||||| | ||||||||||||||||| ||||||||| || |
|
|
| T |
15658882 |
ttcttctcaaaatcctccaacatcaagtcaatacaatgagcagcacatggtgtccaatacaaatgtggcctcttctccatcaacaactcaccagctgcct |
15658783 |
T |
|
| Q |
257 |
tgaaataagccgtattatccgtcacaacttgaagaacattttcttcaccaacctcttcaacaacatcatccatcatcttaaa |
338 |
Q |
| |
|
| ||| || | ||| ||||| || || || | |||||||||||| |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
15658782 |
tataatttgctgcattgtccgtaactacctggacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaa |
15658701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 245814 - 245861
Alignment:
| Q |
291 |
aacattttcttcaccaacctcttcaacaacatcatccatcatcttaaa |
338 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
245814 |
aacattttcttctccaatctcttcaacaacatcatcaatcatcttaaa |
245861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 244685 - 244638
Alignment:
| Q |
291 |
aacattttcttcaccaacctcttcaacaacatcatccatcatcttaaa |
338 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||| ||||||||||| |
|
|
| T |
244685 |
aacattttcttctccaatcttttcaacaacatcatcaatcatcttaaa |
244638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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