View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_high_13 (Length: 449)
Name: NF7987_high_13
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 45706215 - 45706657
Alignment:
| Q |
1 |
aatttcttactaatcttcatctctacttgaaaacagtaataaacaccaccattctcaaacctttgatttttgcaagttcatttagaacctcagtctcaaa |
100 |
Q |
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| T |
45706215 |
aatttcttactaatcttcatctctacttgaaaacaataataaacaccaccattctcaaacctttgatttttgcaagttcatttagaacctcagtctcaaa |
45706314 |
T |
|
| Q |
101 |
cacatcctttcatctattccattcacactaattcctaattttaaaactatagctttgtttccttcaatccatgccattgaactattaaagaaaccctcat |
200 |
Q |
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| T |
45706315 |
cacatcctttcatctattccattcacactaattcctaattttaaaactataactttgtttccttcaatccatgccattgaactattaaagaaaccctcat |
45706414 |
T |
|
| Q |
201 |
ctgttcttcataacccctaaccatgagaaattctttaatgatcaagatcgttaaacaccatgccttttctatgtcacttcccccattggtaggattcttc |
300 |
Q |
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| T |
45706415 |
cagttcttcataacccctaaccatgagaaattctttaatgatcaagatcgttaaacaccatgccttttctatgtcacttcccccattggtaggattcttc |
45706514 |
T |
|
| Q |
301 |
tcttccttttaatgttgaatcttaaatgatattttcctttttaccaaaacaatggctatcatcagtggatattttaccattcttgaggctggtagtgtac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45706515 |
tcttccttttaatgttgaatcttaaatgatattttcctttttactaaaacaatggctatcatcagtggatattttaccattcttgaggctggtagtgtac |
45706614 |
T |
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| Q |
401 |
ccaagaaactcgatccatccaccaacacatcattttgtctttg |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45706615 |
ccaagaaactcgatccatccaccaacacatcattttgtctttg |
45706657 |
T |
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