View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7987_high_21 (Length: 375)
Name: NF7987_high_21
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_high_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 347
Target Start/End: Complemental strand, 36354098 - 36353776
Alignment:
| Q |
20 |
aacatgtccctcccatccctagcttccaagatcacctagatgttgtctccctatgatttgaaaaataattagaagaagcaaagaatagagaaatgaaaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36354098 |
aacatgtccctcccatccctagcttccaagatcacctagatgttgtctccctatgatttgaaaaataattagaagaagcaaagaatagagaaatgaaaaa |
36353999 |
T |
|
| Q |
120 |
gagtgacgacgaggaaaatatcaaaacccaacaaactaatgagaggttataaaaggaaaatgaatcaattgaatttaatccgactaacctaatgaaaagc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36353998 |
gagtgacgacgaggaaaatatcaaaacccaacaaactaatgagaggttataaaaggaaaatgaatcaattgaatttaatccgactaacctaatgaaaagc |
36353899 |
T |
|
| Q |
220 |
tagttgtgaatactgcttcttgttggaagattgatttgatgaatcatgtttttgagaaaggttctataggattcacatcccaaaatggatcagagttcaa |
319 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36353898 |
tagttgtgaa---tgcttcttgttggaagattgatttgatgaatcatgtttttgagaaagtttctataggattcacatcccaaaatggatcagagttcaa |
36353802 |
T |
|
| Q |
320 |
ccaaattgaaaagggaaaattcatgaag |
347 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
36353801 |
ccaaattg--aagggaaaattcatgaag |
36353776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 329
Target Start/End: Complemental strand, 11836659 - 11836567
Alignment:
| Q |
236 |
ttcttgttggaagattgatttgatgaatcatgtttttgagaaaggttctataggattcacatcccaaaatggatcagagttcaaccaaattgaa |
329 |
Q |
| |
|
||||||||| ||| ||| ||||| ||||||||||||||| |||||| |||| | || |||||||| ||| || ||||||| ||||||||||| |
|
|
| T |
11836659 |
ttcttgttgcaaggttggattgattaatcatgtttttgag-aaggttatataagtttatcatcccaagatgaataagagttctaccaaattgaa |
11836567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University