View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_high_23 (Length: 368)
Name: NF7987_high_23
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 358
Target Start/End: Complemental strand, 41703165 - 41702827
Alignment:
| Q |
20 |
tgtcaaaagtatgatatcttcctccaatgttgctgctctttcacgcactcgaataaacttcctcttcctcttcaaagccttaagtaatatctccacttcg |
119 |
Q |
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| T |
41703165 |
tgtcaaaagtatgatatcttcctccgatgttgctgctctttcacccactcgaataaacttcctgttcctcttcaaagccttaagtaatatctccacttcg |
41703066 |
T |
|
| Q |
120 |
cacttctcctctgtcaatttcctgctttcattcctcaactcattcatcgttgccaaattcttctttactgtttcctccaattctccaattttaatctgtg |
219 |
Q |
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| T |
41703065 |
cacttctcctctgtcaatttcctgctttcattcctcaactcattcatcgttgccaaattcttctttactgtttcctccaattctccaattttactctgta |
41702966 |
T |
|
| Q |
220 |
attcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaac |
319 |
Q |
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| T |
41702965 |
attcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaac |
41702866 |
T |
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| Q |
320 |
aatctttcttcttaacacatcaacttcattgttcttctt |
358 |
Q |
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| T |
41702865 |
aatctttcttcttaacacatcaacttcattgttcttctt |
41702827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 41469392 - 41469579
Alignment:
| Q |
23 |
caaaagtatgatatcttcctccaatgttgctgctctttcacgcactcgaataaacttcctcttcctcttcaaagccttaagtaatatctccacttcgcac |
122 |
Q |
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| T |
41469392 |
caaaagaatgagatcttcctccaacgttgttactctttcacgcagtcgaataaacttc------ctcttcaaagcctcaagtaatgtctcggcttcgcgc |
41469485 |
T |
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| Q |
123 |
ttctcctctgtcaatttcctgctttcattcctcaactcattcatcgttgccaaattcttctttactgtttcctccaattctccaattttaatct |
216 |
Q |
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| T |
41469486 |
ttctcctctgccaatttcctgctttcatgcctcaagtcactcatcattaccaaattcttctttgctgtttccttcaattcatcatttttaatct |
41469579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 220 - 350
Target Start/End: Original strand, 41469655 - 41469785
Alignment:
| Q |
220 |
attcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaac |
319 |
Q |
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| T |
41469655 |
attcaccagacatttttcttaattcacccaattcaatgtcatcttcctcccattttttcttaatcttgtttaactctaaaacttcatcctctaattcaac |
41469754 |
T |
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| Q |
320 |
aatctttcttcttaacacatcaacttcattg |
350 |
Q |
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| T |
41469755 |
aatctttgttcttattacatcaacttcattg |
41469785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 350
Target Start/End: Original strand, 41499628 - 41499699
Alignment:
| Q |
279 |
tttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg |
350 |
Q |
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||||| ||| |||||||||||| |||| |||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
41499628 |
tttaatttcctcaactccaaaatttcagattctaattcaacaatctttgttcttaacacaccaacttcattg |
41499699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 41509401 - 41509462
Alignment:
| Q |
288 |
ttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcatt |
349 |
Q |
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| T |
41509401 |
ttcaactccaaaacttcattgtctaattcaaccttcttttttcttaacatatcaagttcatt |
41509462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 41499525 - 41499605
Alignment:
| Q |
269 |
ccattttttctttaacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcatt |
349 |
Q |
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|||||||||||| |||||| |||||||||||||||||| |||||||| | ||||| || ||||| |||| ||| |||||| |
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| T |
41499525 |
ccattttttcttcaacttcctcaactccaaaacttcatgctctaatttaccaatcatttctcttagcacaacaagttcatt |
41499605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 350
Target Start/End: Original strand, 41515440 - 41515508
Alignment:
| Q |
282 |
aacttcttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg |
350 |
Q |
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|||||| |||||||||||| |||| |||||||||| || |||||||||||||||||| || ||||||| |
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| T |
41515440 |
aacttcctcaactccaaaatttcagactctaattcaccattctttcttcttaacacataaatttcattg |
41515508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 41519624 - 41519686
Alignment:
| Q |
288 |
ttcaactccaaaacttcattctctaattcaacaatctttcttcttaacacatcaacttcattg |
350 |
Q |
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|||||||||||||||||||| ||||||||| | ||||| ||||||||| ||||| ||||||| |
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| T |
41519624 |
ttcaactccaaaacttcattgtctaattcacccttcttttttcttaacatatcaagttcattg |
41519686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 41547556 - 41547604
Alignment:
| Q |
168 |
gttgccaaattcttctttactgtttcctccaattctccaattttaatct |
216 |
Q |
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| T |
41547556 |
gttgccaaattcttgtttactgtttcattcaattcaccatttttaatct |
41547604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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