View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_high_27 (Length: 322)
Name: NF7987_high_27
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 29019269 - 29018952
Alignment:
| Q |
1 |
aacctcaaacttacatgactcctaatataatttaaccaaaaatatattatattgacannnnnnngtgttaaagattctagcggcaaaataaacacagatt |
100 |
Q |
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| T |
29019269 |
aacctcaaacttaaatgactcctaatataatttaaccaaaaatatattatattgacatttttttgtgttaaagattctagcggcaaaattaacacagatt |
29019170 |
T |
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| Q |
101 |
aaatgcaaagaaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgagctttacttatagacatata |
200 |
Q |
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|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| || |
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| T |
29019169 |
aaatgcaaagaaatagagaattgcgaattcgaacttacgtcacaacatatcaaatgtctctccaatcttttatcatttgaactttacttatagacatgta |
29019070 |
T |
|
| Q |
201 |
ttgacattttatatgagaaaatattatagtattaggggaaggaatatagggattaccttccctggatgagtattgccccaatctacagcatacttaatat |
300 |
Q |
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| T |
29019069 |
ttgacattttatatgagaaaatattatagtattaggggaaggaatatagggattaccttccctggatgagtattgccccaatcaacagcatacttaatat |
29018970 |
T |
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| Q |
301 |
cttgacacaggttctgct |
318 |
Q |
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| T |
29018969 |
cttgacacatgttttgct |
29018952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 126 - 318
Target Start/End: Complemental strand, 29040505 - 29040311
Alignment:
| Q |
126 |
agttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgagctttacttat-agacatatattgacattttatatgagaaaatat |
224 |
Q |
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| T |
29040505 |
agttcaaactcaagtcccagaatatcaaatgtttatccaatcttttatcgtttgaactatacttctgaggcatatattgagattttataacagcaattac |
29040406 |
T |
|
| Q |
225 |
tatagtattaggggaa-ggaatatagggattaccttccctggatgagtattgccccaatctacagcatacttaatatcttgacacaggttctgct |
318 |
Q |
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| T |
29040405 |
tatagtattacgggaaaggaatatagggattaccttctctggatgtgtattgccccaatcaacagcatacttaatatcttgacacatgttttgct |
29040311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 26919928 - 26919846
Alignment:
| Q |
111 |
aaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaa-tcttttatcatttgagctttacttata |
192 |
Q |
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||||||||||||| |||||| |||||||| ||||||||||||| ||| | ||| | |||||||||||||| | |||||||| |
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| T |
26919928 |
aaatggagaattgtgagttcatcctcacgtcccaacatatcaaatatctttacaatttttttatcatttgagttatacttata |
26919846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 39992176 - 39992223
Alignment:
| Q |
143 |
caacatatcaaatttctctccaatcttttatcatttgagctttactta |
190 |
Q |
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| T |
39992176 |
caacatatcaaatttctctgcaattctttatcatttgagttttactta |
39992223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 15091360 - 15091290
Alignment:
| Q |
111 |
aaatggagaattgcgagttcgaactcacgtcacaacatatcaaatttctctccaatcttttatcatttgag |
181 |
Q |
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||||||||||||| |||||| |||||||| | ||||||||||||| ||| | |||| ||||| ||| |||| |
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| T |
15091360 |
aaatggagaattgtgagttcaaactcacgccccaacatatcaaatgtctttgcaatattttaccatctgag |
15091290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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