View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7987_high_40 (Length: 252)

Name: NF7987_high_40
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7987_high_40
NF7987_high_40
[»] chr3 (13 HSPs)
chr3 (36-223)||(22638148-22638336)
chr3 (36-224)||(22636533-22636725)
chr3 (116-223)||(22632899-22633006)
chr3 (106-248)||(22443748-22443891)
chr3 (36-122)||(22371591-22371677)
chr3 (106-175)||(22371381-22371449)
chr3 (187-250)||(22354369-22354432)
chr3 (106-237)||(22468941-22469070)
chr3 (187-252)||(22371115-22371180)
chr3 (141-224)||(22445515-22445597)
chr3 (168-252)||(22437615-22437702)
chr3 (168-224)||(22359032-22359085)
chr3 (187-224)||(22368936-22368973)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 36 - 223
Target Start/End: Complemental strand, 22638336 - 22638148
Alignment:
Q  36 ttacaaatgatgtcaaggtactggataa-ttattaaacaatgaccaagagggaaacaaaaattctaagtgttcacaccgttggactttatgctatataaa 134  Q
    |||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  22638336 ttacaaatgatgtcaaggtactggataaattattaaacaatgaccgaaagggaaacagaaattctaagtgttcacaccgttggactttatgcgatataaa 22638237  T
Q  135 tcatgaaaggactaatagctttcttcatcattcatctcactcacaatgctagtagcaaattaaaatcaaagatacaacaaaatgtgtga 223  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22638236 tcacgaaaggactaatagctttcttcatcattcatctcactcacaatactagtagcaaattaaaatcaaagatacaacaaaatgtgtga 22638148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 36 - 224
Target Start/End: Complemental strand, 22636725 - 22636533
Alignment:
Q  36 ttacaaatgatgtcaaggtactggataa-ttattaaacaatgaccaagagggaaacaaaaattctaagtgttcacaccgttggactttatgctatataaa 134  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  22636725 ttacaaatgatgtcaaggtactggataaattattaaacaatgaccaagagggaatcaaaaattctaagtgttcacaccgttggactttatgcgatataaa 22636626  T
Q  135 tcatgaaaggactaatagc--tttcttcatcattc-atctcactcacaatgctagtagcaaattaaaatcaaagatacaacaaaatgtgtgac 224  Q
    ||| |||||||||||||||  |||| ||| ||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  22636625 tcacgaaaggactaatagctttttcctcaccattcaatctcactcacaatactagtagcaaattaaaatcaaatatacaacaaaatgtgtgac 22636533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 22633006 - 22632899
Alignment:
Q  116 ggactttatgctatataaatcatgaaaggactaatagctttcttcatcattcatctcactcacaatgctagtagcaaattaaaatcaaagatacaacaaa 215  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22633006 ggactttatgcgatataaatcatgaaaggactaatagctttcttcatcattcatctcactcacaatgctagtagcaaattaaaatcaaagatacaacaaa 22632907  T
Q  216 atgtgtga 223  Q
    ||||||||    
T  22632906 atgtgtga 22632899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 106 - 248
Target Start/End: Complemental strand, 22443891 - 22443748
Alignment:
Q  106 tcacaccgttggactttatgctatataaatcatgaaaggactaatagctttcttcat--cattcatctcactcacaatgctagtagcaaattaaaatcaa 203  Q
    |||||| ||||||||||||||||||||| |  |||| |||||||||||||| | |||  || | |||||||||||||| ||||||||||||||||||||     
T  22443891 tcacactgttggactttatgctatataagttttgaa-ggactaatagctttttccatatcactaatctcactcacaatactagtagcaaattaaaatcat 22443793  T
Q  204 agatacaacaaaatgtgtgacgctgcactttcctgcgcttgtgat 248  Q
    |||| |||||||||||||||| ||||||||||||||||| |||||    
T  22443792 agattcaacaaaatgtgtgacactgcactttcctgcgctcgtgat 22443748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 22371677 - 22371591
Alignment:
Q  36 ttacaaatgatgtcaaggtactggataattattaaacaatgaccaagagggaaacaaaaattctaagtgttcacaccgttggacttt 122  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||||| ||||  |||||| ||||||||||||| |||||||||    
T  22371677 ttacaaatgatgtcaaggtactcaataattattaaacaatgaccgagaggaaaactcaaattcaaagtgttcacaccattggacttt 22371591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 22371449 - 22371381
Alignment:
Q  106 tcacaccgttggactttatgctatataaatcatgaaaggactaatagctttcttcatcattcatctcact 175  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  22371449 tcacaccattggactttatgctatataaatcatg-aaggactaatagctttcctcatcattcatctcact 22371381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 22354432 - 22354369
Alignment:
Q  187 tagcaaattaaaatcaaagatacaacaaaatgtgtgacgctgcactttcctgcgcttgtgatca 250  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||  |||||||    
T  22354432 tagcaaattcaaatcaaagatacaacaaaatgtgtgacactgcactttcctgcgcccgtgatca 22354369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 237
Target Start/End: Complemental strand, 22469070 - 22468941
Alignment:
Q  106 tcacaccgttggactttatgctatataaatcatgaaaggactaatagctttcttcat--cattcatctcactcacaatgctagtagcaaattaaaatcaa 203  Q
    |||||| |||||||||||||||||||||||  |||| ||||| |||||||| | |||  || |||||| ||||||||| || |   ||||||||||||||    
T  22469070 tcacactgttggactttatgctatataaattttgaa-ggactgatagctttttccatatcactcatcttactcacaatacttg---caaattaaaatcaa 22468975  T
Q  204 agatacaacaaaatgtgtgacgctgcactttcct 237  Q
    | |||||| |||||||||||  ||||||||||||    
T  22468974 acatacaaaaaaatgtgtgagactgcactttcct 22468941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 22371180 - 22371115
Alignment:
Q  187 tagcaaattaaaatcaaagatacaacaaaatgtgtgacgctgcactttcctgcgcttgtgatcatt 252  Q
    ||||||||| ||||| |||||||||||||||||||||| ||| |||||||| |||| |||||||||    
T  22371180 tagcaaattcaaatcgaagatacaacaaaatgtgtgacactgtactttccttcgctcgtgatcatt 22371115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 22445597 - 22445515
Alignment:
Q  141 aaggactaatagctttct--tcatcattcatctcactcacaatgctagtagcaaattaaaatcaaagatacaacaaaatgtgtgac 224  Q
    |||||||||||||||| |  || ||||||||||||||||||||   | ||||||||| |||||||| |||||||||||||||||||    
T  22445597 aaggactaatagctttgtcctcgtcattcatctcactcacaat---attagcaaattgaaatcaaatatacaacaaaatgtgtgac 22445515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 22437702 - 22437615
Alignment:
Q  168 atctcactcacaatgctagtagcaaattaaaatcaaagatacaacaaaatgtgtg------acgctgcactttcctgcgcttgtgatcatt 252  Q
    ||||||||||||||   | |||||||||||||||||| |||||||||||||||||      ||||||||||| |||||||| |||||||||    
T  22437702 atctcactcacaat---attagcaaattaaaatcaaatatacaacaaaatgtgtgactgtaacgctgcacttgcctgcgctcgtgatcatt 22437615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 22359085 - 22359032
Alignment:
Q  168 atctcactcacaatgctagtagcaaattaaaatcaaagatacaacaaaatgtgtgac 224  Q
    ||||||||||||||   | ||||||||| |||||||| |||||||||||||||||||    
T  22359085 atctcactcacaat---attagcaaattgaaatcaaatatacaacaaaatgtgtgac 22359032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 22368973 - 22368936
Alignment:
Q  187 tagcaaattaaaatcaaagatacaacaaaatgtgtgac 224  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  22368973 tagcaaattgaaatcaaatatacaacaaaatgtgtgac 22368936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University