View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7987_high_43 (Length: 244)

Name: NF7987_high_43
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7987_high_43
NF7987_high_43
[»] chr5 (7 HSPs)
chr5 (41-228)||(1739595-1739782)
chr5 (41-228)||(1744932-1745122)
chr5 (42-213)||(1725241-1725412)
chr5 (41-181)||(1715552-1715695)
chr5 (41-78)||(1739424-1739461)
chr5 (114-167)||(1760728-1760781)
chr5 (41-78)||(1744767-1744804)
[»] chr3 (4 HSPs)
chr3 (42-143)||(3167638-3167739)
chr3 (42-143)||(3156552-3156653)
chr3 (42-143)||(3138820-3138921)
chr3 (51-143)||(2023214-2023306)
[»] chr8 (1 HSPs)
chr8 (42-143)||(23852503-23852607)
[»] chr7 (2 HSPs)
chr7 (41-166)||(7490802-7490921)
chr7 (41-123)||(7484085-7484167)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 1739595 - 1739782
Alignment:
Q  41 tttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagtt 140  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739595 tttggtggtgcaactgcttcgaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagtt 1739694  T
Q  141 caagcacaatcataaacaataaaaatagtgaggatcctactactaccaaggataatattgatctgtctaagtttaactcggaagaaga 228  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1739695 caagtacaatcataaacaataaaaatagtgaggatcatactactaccaaggataatattgatctgtctaagtttaactcggaagaaga 1739782  T

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Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 41 - 228
Target Start/End: Original strand, 1744932 - 1745122
Alignment:
Q  41 tttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagtt 140  Q
    ||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||  |||| |||||||||||||||||||||||| |||||||    
T  1744932 tttggtggtgcaactgcttcaaggattgaagatggtatgaataacaagattggtgctattactaaatttggagattcttctacaaatgttgccacaagtt 1745031  T
Q  141 caagcacaatcataaacaataaaaatagtgaggatcctactactac---caaggataatattgatctgtctaagtttaactcggaagaaga 228  Q
    |||||||||||||||||||||||||||||| |||||||||||||||   ||||||| |||||||| |||| ||||| ||| | ||||||||    
T  1745032 caagcacaatcataaacaataaaaatagtgtggatcctactactaccagcaaggatgatattgatttgtcgaagttcaacgcagaagaaga 1745122  T

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Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 42 - 213
Target Start/End: Original strand, 1725241 - 1725412
Alignment:
Q  42 ttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttc 141  Q
    ||||||||  |||||||||||||||||||||||  || ||| | || |||||||||||| | ||||  ||||||||||||| | ||||||||||||||||    
T  1725241 ttggtggtggaactacttcaaggattgaagatgacacaaataataaaattggtgctatttttaaatggggagattcttctaaacatgttgctacaagttc 1725340  T
Q  142 aagcacaatcataaacaataaaaatagtgaggatcctactactaccaaggataatattgatctgtctaagtt 213  Q
    || | |||||||||| |||||||||| || |||| ||||||| ||||||||| |||||||| |||| |||||    
T  1725341 aaacgcaatcataaaaaataaaaatattgtggatgctactaccaccaaggatgatattgatatgtcgaagtt 1725412  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 181
Target Start/End: Complemental strand, 1715695 - 1715552
Alignment:
Q  41 tttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattc---ttctacaaatgttgctacaa 137  Q
    ||||| ||| ||| || ||||| ||||||||||||||| ||| |||| ||||| | | ||||||||| |||||||||   |||| |||| ||||||| ||    
T  1715695 tttgggggtgcaattatttcaaagattgaagatggtaccaataacaaaattggagttcttataaaatttggagattcttcttctgcaaacgttgctataa 1715596  T
Q  138 gttcaagcacaatcataaacaataaaaatagtgaggatcctact 181  Q
    ||||||   ||||||| || ||||||||||| | ||||||||||    
T  1715595 gttcaaattcaatcatgaaaaataaaaatagcgtggatcctact 1715552  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 1739424 - 1739461
Alignment:
Q  41 tttggtggttcaactacttcaaggattgaagatggtac 78  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1739424 tttggtggttcaactacttcaaggattgaagatggtac 1739461  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 1760728 - 1760781
Alignment:
Q  114 attcttctacaaatgttgctacaagttcaagcacaatcataaacaataaaaata 167  Q
    |||||||||||||| ||| ||||||||||| | |||||||| ||||||||||||    
T  1760728 attcttctacaaatattgatacaagttcaaactcaatcatacacaataaaaata 1760781  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Original strand, 1744767 - 1744804
Alignment:
Q  41 tttggtggttcaactacttcaaggattgaagatggtac 78  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  1744767 tttggtggtgcaattacttcaaggattgaagatggtac 1744804  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 3167638 - 3167739
Alignment:
Q  42 ttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttc 141  Q
    |||||||| ||| |||||||||||| ||||||||||| ||| | || |||||||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  3167638 ttggtggtgcaagtacttcaaggatagaagatggtacaaataataaaattggtgctattctaaaattaggagattcttctacaaatgttgctacaagttc 3167737  T
Q  142 aa 143  Q
    ||    
T  3167738 aa 3167739  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 3156653 - 3156552
Alignment:
Q  42 ttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttc 141  Q
    |||||||| ||| |||||||||||||||||||||||| ||| | || || ||||||||| ||||||  |||||||||||||||||||||||| |||||||    
T  3156653 ttggtggtgcaagtacttcaaggattgaagatggtacaaataataaaataggtgctattctaaaattaggagattcttctacaaatgttgctgcaagttc 3156554  T
Q  142 aa 143  Q
    ||    
T  3156553 aa 3156552  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 3138921 - 3138820
Alignment:
Q  42 ttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttc 141  Q
    |||||||| |||||||||||| ||| ||| |||||||  || | || |||||||||||| || |||  ||||||||||||||||| |||||||||| |||    
T  3138921 ttggtggtgcaactacttcaaagatcgaatatggtacatataataaaattggtgctattttagaattgggagattcttctacaaaggttgctacaatttc 3138822  T
Q  142 aa 143  Q
    ||    
T  3138821 aa 3138820  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 143
Target Start/End: Original strand, 2023214 - 2023306
Alignment:
Q  51 caactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagttcaa 143  Q
    ||||||||| ||||||||||||||||   ||| | || |||||| ||| | |||| | || ||||||||||||||||||| | ||||||||||    
T  2023214 caactactttaaggattgaagatggtgaaaataataaaattggtactaatctaaagtttgaagattcttctacaaatgttacaacaagttcaa 2023306  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 23852503 - 23852607
Alignment:
Q  42 ttggtggttcaactacttcaaggattgaagatggtacgaatgacaaga---ttggtgctattataaaatctggagattcttctacaaatgttgctacaag 138  Q
    |||| ||| ||||||||||||| || ||||||||||| ||| | || |   ||||||||||| ||||||  |||||||||||||||||| ||||||||||    
T  23852503 ttggcggtgcaactacttcaagaatcgaagatggtacaaataataataaaattggtgctattttaaaattgggagattcttctacaaatattgctacaag 23852602  T
Q  139 ttcaa 143  Q
    |||||    
T  23852603 ttcaa 23852607  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 166
Target Start/End: Complemental strand, 7490921 - 7490802
Alignment:
Q  41 tttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctacaaatgttgctacaagtt 140  Q
    ||||||||  ||| ||||||||| |||||||||||||| ||| | || |||||||||||| |||||  ||||||||||||||      ||||||||||||    
T  7490921 tttggtggagcaagtacttcaagaattgaagatggtacaaataataaaattggtgctattctaaaacttggagattcttcta------ttgctacaagtt 7490828  T
Q  141 caagcacaatcataaacaataaaaat 166  Q
    ||||| ||| || |||||| ||||||    
T  7490827 caagctcaaacacaaacaagaaaaat 7490802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 7484167 - 7484085
Alignment:
Q  41 tttggtggttcaactacttcaaggattgaagatggtacgaatgacaagattggtgctattataaaatctggagattcttctac 123  Q
    ||||||||  ||| ||||||||| ||| |||||||||| ||| | || |||||||||||| |||||  ||| |||||||||||    
T  7484167 tttggtggagcaagtacttcaagaattaaagatggtacaaataataaaattggtgctattctaaaacttggtgattcttctac 7484085  T

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