View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_high_48 (Length: 238)
Name: NF7987_high_48
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 27562279 - 27562454
Alignment:
| Q |
16 |
atatatcccatacagaatcgacaaatgaatgacagaaggaaagaaatcgcaaaaaacaaaaccctggcttcctcaattgaattcttcaacacagacaaac |
115 |
Q |
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| T |
27562279 |
atatatctcagacagaatcgacaaatgaatgacagaaggaaagaaatcgcaaaaaataaaaccttggcttcctcaattgaattcttcaacacagacaaaa |
27562378 |
T |
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| Q |
116 |
ccatggctctctctgcaggcttctcagcagacaagcttccattcatagcatcagcattggaggaattcattcccat |
191 |
Q |
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| T |
27562379 |
ccatggctctctctgcaggcttctcagcagacaagcttccattcatagcatcagcattggaggaattcattcccat |
27562454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 29 - 191
Target Start/End: Original strand, 36669348 - 36669509
Alignment:
| Q |
29 |
agaatcgacaaatgaatgacagaaggaaagaaatcgcaaaaaacaaaaccctggcttcctcaattgaattcttcaacacagacaaacccatggctctctc |
128 |
Q |
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| T |
36669348 |
agaatcgacaaatgaatgacagaaggaaagaaatcacaaaaat-aaaaccttcacttcctcaattgaattcttcaactcagacaaacccatagctctctc |
36669446 |
T |
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| Q |
129 |
tgcaggcttctcagcagacaagcttccattcatagcatcagcattggaggaattcattcccat |
191 |
Q |
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| T |
36669447 |
tgcaggcttctcaggagacacttttccgttcactgcatcagcattggaggaattcattcccat |
36669509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 191
Target Start/End: Original strand, 26928828 - 26928990
Alignment:
| Q |
29 |
agaatcgacaaatgaatgacagaaggaaagaaatcgcaaaaaacaaaaccctggcttcctcaattgaattcttcaacacagacaaacccatggctctctc |
128 |
Q |
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||||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||| | |||||| ||||||||||| |
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| T |
26928828 |
agaatcgacaaatgaatgagagaaggaaagaaatcacaaaaaataaaaccttggcttcctcaattgaatttttcaagtcggacaaagtaatggctctctc |
26928927 |
T |
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| Q |
129 |
tgcaggcttctcagcagacaagcttccattcatagcatcagcattggaggaattcattcccat |
191 |
Q |
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|||||||||||||| ||||||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
26928928 |
tgcaggcttctcaggagacaagtttccattcactacatcagcattggtggaattcattcccat |
26928990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 29411856 - 29411998
Alignment:
| Q |
50 |
gaaggaaagaaa-tcgcaaaaaacaaaaccctggcttcctcaattgaattcttcaacacagacaaacccatggctctctctgcaggcttctcagcagaca |
148 |
Q |
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|||||||||||| || |||||| ||||| |||||||||||||||| | ||||||| | |||||||||||||| || |||||||||||||||| ||||| |
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| T |
29411856 |
gaaggaaagaaaatcacaaaaagttaaaccttggcttcctcaattgagtgcttcaactcggacaaacccatggccctatctgcaggcttctcaggagaca |
29411955 |
T |
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| Q |
149 |
agcttccattcatagcatcagcattggaggaattcattcccat |
191 |
Q |
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| T |
29411956 |
agtttccattcaatgagtcagcattagaggaattcattcccat |
29411998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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