View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7987_low_1 (Length: 722)

Name: NF7987_low_1
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7987_low_1
NF7987_low_1
[»] chr6 (1 HSPs)
chr6 (5-722)||(29837737-29838454)
[»] chr1 (4 HSPs)
chr1 (29-124)||(34628690-34628785)
chr1 (589-712)||(34628161-34628284)
chr1 (197-288)||(34628535-34628626)
chr1 (434-494)||(34628391-34628451)


Alignment Details
Target: chr6 (Bit Score: 694; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 5 - 722
Target Start/End: Original strand, 29837737 - 29838454
Alignment:
Q  5 tgtcgaagaatataattgaacggctatctgctcttagaacgcgtatagttgtaatggctagccaagaaggacctacaattacaagaacaaaaagaaaaag 104  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29837737 tgtcgaagaatataatcgaacggatatctgctcttagaacgcgtatagttgtaatggctagccaagaaggacctacaattacaagaacaaaaagaaaaag 29837836  T
Q  105 tgttactcaacatggttagttttttagcaaaggtaaaattattctatgatatataagttgtgttgtaatttattgatgcatctgtgtcgtttgatttcat 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  29837837 tgttactcaacatggttagttttttagcaaaggtaaaattattctatgatatataagttgtgttgtaatttattgatgcatcggtgtcgtgtgatttcat 29837936  T
Q  205 cttcaggtggttcaacgctcgctaatcttcttcaggctcttgaagattacttgccggttcttctaggattagttaaagacggtatatcttgtgtttgttc 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29837937 cttcaggtggttcaacgctcgctaatcttcttcaggctcttgaagattacttgccggttcttctaggattagttaaagacggtaaatcttgtgtttgttc 29838036  T
Q  305 gttagtacctcgatgtttaaaccatttacacaccatgcgcaccaaccacttgtgctagaccccggtgtttgatgtatgctctctgtaagacaaagtactg 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29838037 gttagtacctcgatgtttaaaccatttacacaccatgcgcaccaaccacttgtgctagaccccggtgtttgatgtatgctctctgtaagacaaaatactg 29838136  T
Q  405 attattattacttatctttatggtgtaggaagtcatttacaatacaaagtacagtttgtttggatgaaccaagaagatgaaaaagaggtaccttctaaaa 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29838137 attattattacttatctttatggtgtaggaagtcatttacaatacaaagtacagtttgtttggatgaaccaagaagatgaaaaagaggtaccttctaaaa 29838236  T
Q  505 ttcatacatatttttgagtttaatttacttcctatagagaagaatgctgatcaatttgttccggttacttttgtgcgctctttacaggaaacaaccatgt 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29838237 ttcatacatatttttgagtttaatttacttcctatagagaagaatgctgatcaatttgttccggttacttttgtgcgctctttacaggaaacaaccatgt 29838336  T
Q  605 ctaatgcttggtatgaggtgttgtcggttttgcatttgatgtcaatgctattactgtcaaaggctaatttgctgctgcttccaagatcatccagtgacgg 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29838337 ctaatgcttggtatgaggtgttgtcggttttgcatttgatgtcaatgctattactgtcaaaggctaatttgctgctgcttccaagatcatccagtgacgg 29838436  T
Q  705 tcatcagcagagagtatc 722  Q
    ||||||||||||||||||    
T  29838437 tcatcagcagagagtatc 29838454  T

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Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 29 - 124
Target Start/End: Complemental strand, 34628785 - 34628690
Alignment:
Q  29 tatctgctcttagaacgcgtatagttgtaatggctagccaagaaggacctacaattacaagaacaaaaagaaaaagtgttactcaacatggttagt 124  Q
    |||||||||||||||| ||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  34628785 tatctgctcttagaactcgtatcgttgtaatggctggtcaagaaggtcctacaattacaagaacaaaaagaaaaagtgcaactcaacatggttagt 34628690  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 589 - 712
Target Start/End: Complemental strand, 34628284 - 34628161
Alignment:
Q  589 caggaaacaaccatgtctaatgcttggtatgaggtgttgtcggttttgcatttgatgtcaatgctattactgtcaaaggctaatttgctgctgcttccaa 688  Q
    ||||||||| |||||||||||||||||||||| |||||||| || ||||| |||||| |||  ||||| || ||| ||||||||||  | || |||||||    
T  34628284 caggaaacagccatgtctaatgcttggtatgaagtgttgtcagtcttgcacttgatggcaacactattgctatcacaggctaatttattacttcttccaa 34628185  T
Q  689 gatcatccagtgacggtcatcagc 712  Q
    || ||||||  || ||||||||||    
T  34628184 gaacatccaccgatggtcatcagc 34628161  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 34628626 - 34628535
Alignment:
Q  197 gatttcatcttcaggtggttcaacgctcgctaatcttcttcaggctcttgaagattacttgccggttcttctaggattagttaaagacggta 288  Q
    ||||||||| ||||| |||||||| || ||| ||||||| |||||||||||||| ||||| ||||| ||| | |||||||| ||||| ||||    
T  34628626 gatttcatcctcaggaggttcaacactggctgatcttctacaggctcttgaagactacttaccggtacttttgggattagtcaaagatggta 34628535  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 494
Target Start/End: Complemental strand, 34628451 - 34628391
Alignment:
Q  434 aagtcatttacaatacaaagtacagtttgtttggatgaaccaagaagatgaaaaagaggta 494  Q
    |||||||||||||||||||||||| |||||||||||||| || || ||||||  |||||||    
T  34628451 aagtcatttacaatacaaagtacaatttgtttggatgaatcaggaggatgaagcagaggta 34628391  T

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