View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7987_low_12 (Length: 462)

Name: NF7987_low_12
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7987_low_12
NF7987_low_12
[»] chr5 (18 HSPs)
chr5 (14-447)||(8527911-8528355)
chr5 (14-447)||(8534487-8534920)
chr5 (14-333)||(1600915-1601241)
chr5 (177-299)||(9075167-9075289)
chr5 (306-447)||(8640502-8640644)
chr5 (160-302)||(8548785-8548929)
chr5 (42-241)||(8640663-8640871)
chr5 (160-447)||(8643560-8643847)
chr5 (312-370)||(2846187-2846245)
chr5 (312-370)||(2858008-2858066)
chr5 (309-353)||(2875609-2875653)
chr5 (376-447)||(8677344-8677415)
chr5 (160-210)||(9002563-9002613)
chr5 (383-447)||(8636142-8636206)
chr5 (160-223)||(8677547-8677610)
chr5 (161-247)||(8636299-8636385)
chr5 (415-447)||(8549058-8549090)
chr5 (407-447)||(9075303-9075343)
[»] chr4 (1 HSPs)
chr4 (14-447)||(9442078-9442516)
[»] chr1 (4 HSPs)
chr1 (195-447)||(26324320-26324581)
chr1 (116-241)||(5130051-5130177)
chr1 (367-447)||(5129840-5129920)
chr1 (264-320)||(5129979-5130035)
[»] chr7 (2 HSPs)
chr7 (14-250)||(48362374-48362618)
chr7 (311-446)||(48362640-48362776)
[»] chr8 (1 HSPs)
chr8 (361-414)||(44438409-44438462)
[»] chr6 (1 HSPs)
chr6 (264-333)||(16715510-16715579)


Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 447
Target Start/End: Complemental strand, 8528355 - 8527911
Alignment:
Q  14 tttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528355 tttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggc 8528256  T
Q  114 tgatccatcccctgcaatttgcagttttagctactattacttaaccaatatt----------gttttaatttctataggtgtgcaaagtttaaattgcgg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  8528255 tgatccatcccctgcaatttgcagttttagctactattacttaaccaatattccccaatattgttttaatttctataggtgtgcaaagtttaaattgcgg 8528156  T
Q  204 ggagaaaaggaggttctttctctgtctcaacagattgtttgagacttgaa-gttcatgcttttcatcatcttatagtgacttgataaatatatcttcctc 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528155 ggagaaaaggaggttctttctctgtctcaacagattgtttgagacttgaaagttcatgcttttcatcatcttatagtgacttgataaatatatcttcctc 8528056  T
Q  303 cttatctgatggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcgtattgatttgtattctgacccttgcttattacaattt 402  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  8528055 cttatctgatggtgaagagtttggcgaagagcctgcttcctaagaagagtacgtctgctttcgtattgattggtattctgacccctgcttattacaattt 8527956  T
Q  403 taggtatgttacttagactttgttatgtaatattggtgttatttt 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8527955 taggtatgttacttagactttgttatgtaatattggtgttatttt 8527911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 447
Target Start/End: Complemental strand, 8534920 - 8534487
Alignment:
Q  14 tttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggc 113  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8534920 tttcgtgttgacggaggagaagaaaatgaatggacagttgttgtaatctcagttatttggatcttctttagttgctaggtagtaaatagtttcttgaggc 8534821  T
Q  114 tgatccatcccctgcaatttgcagttttagctactattacttaaccaa----------tattgttttaatttctataggtgtgcaaagtttaaattgcgg 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||          |||||||||||||| |||||||||||||||||||||||||||    
T  8534820 tgatccatcccctgtaatttgcagttttagctactattacttaaccaatattccccaatattgttttaatttatataggtgtgcaaagtttaaattgcgg 8534721  T
Q  204 ggagaaaaggaggttctttctctg---tctcaacagattgtttgagacttgaagttcatgcttttcatcatcttatagtgacttgataaatatatcttcc 300  Q
    | ||||||||| ||||||||| ||   ||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||    
T  8534720 gaagaaaaggaagttctttctttgcgatctcaac-gattgtttgagacttgaagttcatgtttttcatcatcttatggtgacttgataaatatatctgcc 8534622  T
Q  301 tccttatctgatggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcgtattgatttgtattctgacccttgcttattacaat 400  Q
    |||||||||||            ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  8534621 tccttatctga------------tggtgaagaacctgcttcctaagaagagtacgtctgctttcgtattgattgttattctgacccttgcttattacaat 8534534  T
Q  401 tttaggtatgttacttagactttgttatgtaatattggtgttatttt 447  Q
    |||||||||||||||||||||| || |||||||||||||||||||||    
T  8534533 tttaggtatgttacttagacttcgtcatgtaatattggtgttatttt 8534487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 1600915 - 1601241
Alignment:
Q  14 tttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggc 113  Q
    ||||||||||||||||| | ||||||||    ||||||||||||| |||| |||||||| |  ||||| |||||||| ||||||||| ||||||| ||      
T  1600915 tttcgtgttgatggaggaggagaaaatg----gacagttgttgtaatgtcagttatttgaacgttctt-agttgctaagtagtaaattgtttcttaagtg 1601009  T
Q  114 tgatccatcccctgcaatttgcagttttagctactattacttaacca----------atattgttttaatttctataggtgtgcaaagtttaaattgcgg 203  Q
    |  |||||||||||||||||||||||||||||| |||||||||||||          ||||||||||||||| |||||||||||||||||||||||||||    
T  1601010 tattccatcccctgcaatttgcagttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgcaaagtttaaattgcgg 1601109  T
Q  204 ggagaaaaggaggttctttctctgtctcaacagattgtttgagactt--gaagttcatgcttttcatcatcttatagtgacttgataaatatatcttcct 301  Q
    | ||||| ||| | ||| ||||||||||||| || ||||| ||||||   || | |||| ||| ||||||||| | ||||||||| |||| ||||||| |    
T  1601110 gaagaaacggaaggtctatctctgtctcaactgactgtttaagacttagaaactacatgttttccatcatcttttggtgacttgaaaaatttatcttcat 1601209  T
Q  302 ccttatctgatggtgaagagtttggtgaagag 333  Q
    |||  |||||||||||||| ||||||||||||    
T  1601210 cctcgtctgatggtgaagaatttggtgaagag 1601241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 177 - 299
Target Start/End: Original strand, 9075167 - 9075289
Alignment:
Q  177 tataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagacttgaagttcatgcttttcatcatcttat 276  Q
    |||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||| |||||||||||||||| ||||  ||| ||||||||||||||     
T  9075167 tataggtgtgcaaagtttaaattgcgggaagaaagggacgttctttctctgtttcaagagattgtttgagacttaaagtatatgtttttcatcatcttac 9075266  T
Q  277 agtgacttgataaatatatcttc 299  Q
     ||||||||||||||| ||||||    
T  9075267 ggtgacttgataaataaatcttc 9075289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 306 - 447
Target Start/End: Complemental strand, 8640644 - 8640502
Alignment:
Q  306 atctgatggtgaa-gagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcgtattgatttgtattctgacccttgcttattacaatttta 404  Q
    ||||||||||||| || ||||||||||  || ||||  |||||||||||||| |  ||| | ||||||||||||| |||||| |||||| ||||||||||    
T  8640644 atctgatggtgaatgattttggtgaaggacccgcttgttaagaagagtacgtttatttttgcattgatttgtattttgacccctgcttactacaatttta 8640545  T
Q  405 ggtatgttacttagactttgttatgtaatattggtgttatttt 447  Q
    || | |||||||||||||||||  |||  ||||||||||||||    
T  8640544 ggcacgttacttagactttgtttcgtaccattggtgttatttt 8640502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 160 - 302
Target Start/End: Original strand, 8548785 - 8548929
Alignment:
Q  160 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagacttgaagttcat 259  Q
    |||||||||||||||| |||||||||| |||||||||||| | || |||||| || ||| ||||  |||||||||||||||||||||||||||    |||    
T  8548785 aatattgttttaatttatataggtgtgtaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaacagattgtttgagacttgacacacat 8548884  T
Q  260 g--cttttcatcatcttatagtgacttgataaatatatcttcctc 302  Q
    |   | ||||| | ||||| ||||| |||||||||||||||||||    
T  8548885 ggattcttcattaccttatggtgacatgataaatatatcttcctc 8548929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 42 - 241
Target Start/End: Complemental strand, 8640871 - 8640663
Alignment:
Q  42 aatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatccatcccctgcaatttgcagtttt 141  Q
    |||||| |||||||||| | || ||| | ||||||| ||| ||||| || ||||||||| |||| |  || ||  ||||||| ||||||||| |||||||    
T  8640871 aatggatagttgttgtaatttcagttttatggatctgcttaagttgttaagtagtaaat-gtttttcaagactattccatcctctgcaattttcagtttt 8640773  T
Q  142 agctactattacttaacca----------atattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctc 231  Q
    ||||| |||||||||||||          ||||||||||||||| |||||||||||||||||||||||| | | |||||| || ||| ||||  ||||||    
T  8640772 agctaatattacttaaccattgttccctaatattgttttaatttatataggtgtgcaaagtttaaattgggagaagaaaatgaagttttttccttgtctc 8640673  T
Q  232 aacagattgt 241  Q
    ||| ||||||    
T  8640672 aacggattgt 8640663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 160 - 447
Target Start/End: Complemental strand, 8643847 - 8643560
Alignment:
Q  160 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagacttgaagtt-ca 258  Q
    |||||||||||||||  ||||||||||||||  | ||||||   | |||||| || ||||||||  |||| |||||  || ||||||| ||| | || ||    
T  8643847 aatattgttttaattgatataggtgtgcaaatgtcaaattggaagaagaaaatgaagttctttccttgtcacaacaagttctttgagatttggaattaca 8643748  T
Q  259 tgcttttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtct 358  Q
     | | ||||||||||||| |||||||||| ||||||| ||||||     ||||||||||||| || | ||| |||||||  |  || ||| |||||||||    
T  8643747 cgttcttcatcatcttatggtgacttgattaatatattttcctcagc--ctgatggtgaagaattcgatgatgagcctgtatattatgaaaagtacgtct 8643650  T
Q  359 gctttcgtattgatttg--tattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttatttt 447  Q
      ||||  ||||||  |  ||||||||||||||| || |||||||||||| |  |||||||| || | || ||||||||||||||||||||    
T  8643649 cttttcacattgatgaggatattctgacccttgcatactacaattttaggca-cttacttaggctcttttttgtaatattggtgttatttt 8643560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 370
Target Start/End: Original strand, 2846187 - 2846245
Alignment:
Q  312 tggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcgtattg 370  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| || ||||| ||||    
T  2846187 tggtgaagaatttggtgaagagcctgcttcctaataagagtacgtttgttttcgcattg 2846245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 312 - 370
Target Start/End: Original strand, 2858008 - 2858066
Alignment:
Q  312 tggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcgtattg 370  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| || ||||| ||||    
T  2858008 tggtgaagaatttggtgaagagcctgcttcctaataagagtacgtttgttttcgcattg 2858066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 2875609 - 2875653
Alignment:
Q  309 tgatggtgaagagtttggtgaagagcctgcttcctaagaagagta 353  Q
    |||||||||||| |||||||||||||||||||||||| |||||||    
T  2875609 tgatggtgaagaatttggtgaagagcctgcttcctaataagagta 2875653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 8677415 - 8677344
Alignment:
Q  376 tattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttatttt 447  Q
    |||||||| || | |||| |||||||||||| ||||||||| | || |||| ||||||||||||||||||||    
T  8677415 tattctgatccgtccttactacaattttaggaatgttacttgggctctgttttgtaatattggtgttatttt 8677344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 9002613 - 9002563
Alignment:
Q  160 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaa 210  Q
    ||||||||| |||||| |||||||||||||||||||||||| ||| |||||    
T  9002613 aatattgttgtaatttatataggtgtgcaaagtttaaattgagggaagaaa 9002563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 447
Target Start/End: Complemental strand, 8636206 - 8636142
Alignment:
Q  383 acccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttatttt 447  Q
    ||||||||||| ||||||||||||||  ||||| || || ||||| |||||||||| ||||||||    
T  8636206 acccttgcttaatacaattttaggtacattactaaggctctgttacgtaatattggcgttatttt 8636142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 8677610 - 8677547
Alignment:
Q  160 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttc 223  Q
    |||||||||||||||  ||||||||||||||  || ||||||||| |||||| || ||||||||    
T  8677610 aatattgttttaattgatataggtgtgcaaatgttgaattgcgggaagaaaatgaagttctttc 8677547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 8636385 - 8636299
Alignment:
Q  161 atattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgaga 247  Q
    |||||||||| |||  ||||||||||||||  || |||||| || |||||| || ||||||||  |||||||||| | |||||||||    
T  8636385 atattgttttgattgatataggtgtgcaaatgttgaattgccggaagaaaatgaagttctttccttgtctcaacaaactgtttgaga 8636299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 415 - 447
Target Start/End: Original strand, 8549058 - 8549090
Alignment:
Q  415 ttagactttgttatgtaatattggtgttatttt 447  Q
    |||| ||||||||||||||||||||||||||||    
T  8549058 ttagcctttgttatgtaatattggtgttatttt 8549090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 447
Target Start/End: Original strand, 9075303 - 9075343
Alignment:
Q  407 tatgttacttagactttgttatgtaatattggtgttatttt 447  Q
    |||||||||||||||||||| ||||||| || |||||||||    
T  9075303 tatgttacttagactttgttgtgtaatactgttgttatttt 9075343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 447
Target Start/End: Complemental strand, 9442516 - 9442078
Alignment:
Q  14 tttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggc 113  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9442516 tttcgtgttgatggaggcgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctatgtagtaaatagtttcttgaggc 9442417  T
Q  114 tgatccatcccctgcaatttgcagttttagctactattacttaaccaatatt----------gttttaatttctataggtgtgcaaagtttaaattgcgg 203  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  9442416 tgatccatcccctgcaatttgcagttttagctactattaattaaccaatattcctcaatattgttttaatttctataggtgtgcaaagtttaaattgcgg 9442317  T
Q  204 ggagaaaaggaggttctttctctgtctcaacagattgtttgagacttgaa-gttcatgcttttcatcatcttatagtgacttgataaatatatcttcctc 302  Q
    ||||||||||||||||||||||||||||||      |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9442316 ggagaaaaggaggttctttctctgtctcaa------gtttgagatttgaaagttcatgcttttcatcatcttatagtgacttgataaatatatcttcctc 9442223  T
Q  303 cttatctgatggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcgtattgatttgtattctgacccttgcttattacaattt 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9442222 cttatctgatggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcgtattgattggtattctgacccttgcttattacaattt 9442123  T
Q  403 taggtatgttacttagactttgttatgtaatattggtgttatttt 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9442122 taggtatgttacttagactttgttatgtaatattggtgttatttt 9442078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 195 - 447
Target Start/End: Original strand, 26324320 - 26324581
Alignment:
Q  195 aaattgcggggagaaaaggaggttctttctctgtctcaac-------agattgtttgagacttgaa-gttcatgcttttcatcatcttatagtgacttga 286  Q
    |||||||||| ||||||||| |||||||||||||||||||       ||||| ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  26324320 aaattgcgggaagaaaaggaagttctttctctgtctcaactctcaacagattttttgagacttgaaagttcatgcttttcatcatcttatggtgacttga 26324419  T
Q  287 taaatatatcttcctccttatctgatggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcgtattgatttgtattctgaccc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||||    
T  26324420 taaatatatcttcctccttatctgatggtgaagagtttggtgaagagccggcttccaaagaagagtacgtctgttttcgtattgattggtattctgaccc 26324519  T
Q  387 ttgcttattacaattttaggtatgtt-acttagactttgttatgtaatattggtgttatttt 447  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26324520 ttgcttattacaattttaggtatgttaacttagactttgttatgtaatattggtgttatttt 26324581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 5130177 - 5130051
Alignment:
Q  116 atccatcccctgcaatttgcagttttagctactattacttaaccaatattgtt-ttaatttctataggtgtgcaaagtttaaattgcggggagaaaagga 214  Q
    |||| |||||||||| ||||||||||||||| |||||| |||  | | || || || |||| || ||||||||||||||||||||||||| |||||| ||    
T  5130177 atccctcccctgcaaattgcagttttagctagtattacataaatattgtttttatttatttatacaggtgtgcaaagtttaaattgcgggaagaaaatga 5130078  T
Q  215 ggttctttctctgtctcaacagattgt 241  Q
     ||| ||||  |||| |||||||||||    
T  5130077 agttttttccttgtcccaacagattgt 5130051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 447
Target Start/End: Complemental strand, 5129920 - 5129840
Alignment:
Q  367 attgatttgtattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttatttt 447  Q
    ||||||| |||||||||| | |||||| |||||||||||| |  ||| |||| | |||||| ||||||||||| |||||||    
T  5129920 attgattggtattctgactcctgcttagtacaattttaggcacattatttaggccttgttacgtaatattggtcttatttt 5129840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 5130035 - 5129979
Alignment:
Q  264 ttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaaga 320  Q
    |||||||||||||  |||| | ||||||||||||||||||  ||||||||| |||||    
T  5130035 ttcatcatcttatcctgacataataaatatatcttcctccgaatctgatggagaaga 5129979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 48362374 - 48362618
Alignment:
Q  14 tttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggc 113  Q
    |||||||||||||||||   |||||||||||||  |||||||||| |||| |||||||||| |||||| ||||| ||  ||||||||||||| | ||| |    
T  48362374 tttcgtgttgatggaggacgagaaaatgaatgggaagttgttgtaatgtcagttatttggaccttctt-agttggtaattagtaaatagttt-tcgagac 48362471  T
Q  114 tgatccatcccctgcaatttgcagttttagctactattacttaacc----------aatattgttttaatttctataggtgtgcaaagtttaaattgcgg 203  Q
    |  ||||||| |||||||||||||||||||||| ||||||||||||          ||||||| |||||||| ||||||||||||||||||||||||| |    
T  48362472 tattccatcctctgcaatttgcagttttagctaatattacttaaccattattcctgaatattggtttaatttatataggtgtgcaaagtttaaattgcag 48362571  T
Q  204 ggagaaaaggaggttctttctctgtctcaacagattgtttgagactt 250  Q
    | ||||||||| | | | |||||||||||||||||||||||||||||    
T  48362572 gaagaaaaggaaggtatatctctgtctcaacagattgtttgagactt 48362618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 311 - 446
Target Start/End: Original strand, 48362640 - 48362776
Alignment:
Q  311 atggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcg-tattgatttgtattctgacccttgcttattacaattttaggtat 409  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||||| ||||| | |||||| || ||||||||| ||| |||||||||||||| |||    
T  48362640 atggtgaagaatttggtgaagagccctcttcctaagaagagtacgtctgttttcgcttttgattggttttctgacccctgcgtattacaattttagttat 48362739  T
Q  410 gttacttagactttgttatgtaatattggtgttattt 446  Q
    |||||| ||||| |||||||||||||| |||||||||    
T  48362740 gttactaagactatgttatgtaatattcgtgttattt 48362776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 414
Target Start/End: Original strand, 44438409 - 44438462
Alignment:
Q  361 tttcgtattgatttgtattctgacccttgcttattacaattttaggtatgttac 414  Q
    ||||| ||||||  ||||| ||||||||||||| ||||||||||||||||||||    
T  44438409 tttcgcattgatcggtattttgacccttgcttactacaattttaggtatgttac 44438462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 16715579 - 16715510
Alignment:
Q  264 ttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaagagtttggtgaagag 333  Q
    ||||| |||||||  |||||||||||||||||||||||| | ||| || |||||||| || | |||||||    
T  16715579 ttcattatcttatgttgacttgataaatatatcttcctcttcatccgacggtgaagaattcgatgaagag 16715510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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