View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_17 (Length: 444)
Name: NF7987_low_17
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 42325895 - 42325470
Alignment:
| Q |
1 |
aaaccaatatcaagagtggtgggagcacctgaacctgtatttttacaccctatagaatccctcttttctatagatctaattaaattatatcttgcatgta |
100 |
Q |
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| T |
42325895 |
aaaccaatatcaagagtggtgggagcacctgaacctgtatttttacaccctatagaatccctcttttctatagatctaattaaattatatcttgcatgta |
42325796 |
T |
|
| Q |
101 |
acatatttaaaatgggaaaaataacacttaaccttgaaagatacttttaagacaatataaataagaagctcaacataactccttttcctcaacaagaaga |
200 |
Q |
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| T |
42325795 |
acatatttaaaatgggaaaaataacacttaaccttgaaagatacttttaagacaatataaataagaagctcaacataactccttt-cctcaacaagaaga |
42325697 |
T |
|
| Q |
201 |
gttatctgagttgtactcttaagtttccactcaactttcttttctctttttcactcttttgtgaaatggcaagaatgtctcaagaaccactcattgttgg |
300 |
Q |
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| T |
42325696 |
attatctgagttgtactcttaagtttccactcaaatttcttttctctttttcactcttttgtgaaatggcaagaatgtctcaagaaccactcattgttgg |
42325597 |
T |
|
| Q |
301 |
aagagtgataggagaagttcttgattcctttaccacaagcatgaaaatgactgtgagttacaacaagaagcaagtcttcaatggccatgagtttttccct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42325596 |
aagagtgataggagaagttcttgattcctttaccacaagcatgaaaatgactgtgagttacaacaagaagcaagtcttcaatggccatgagtttttccct |
42325497 |
T |
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| Q |
401 |
tccactatcaacaccaaacccaaagtt |
427 |
Q |
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| T |
42325496 |
tccactatcaacaccaaacccaaagtt |
42325470 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 384
Target Start/End: Complemental strand, 26206592 - 26206495
Alignment:
| Q |
287 |
ccactcattgttggaagagtgataggagaagttcttgattcctttaccacaagcatgaaaatgactgtgagttacaacaagaagcaagtcttcaatgg |
384 |
Q |
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||||| ||| |||| |||||||||||||| ||| |||| | |||||| ||| || ||||||||||||| ||||||||| || || |||||||||| |
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| T |
26206592 |
ccactaattcttgggagagtgataggagatgttattgactattttaccccaaccacaaaaatgactgtgacttacaacaacaaagaaatcttcaatgg |
26206495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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