View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7987_low_18 (Length: 420)

Name: NF7987_low_18
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7987_low_18
NF7987_low_18
[»] chr8 (8 HSPs)
chr8 (37-397)||(37929281-37929641)
chr8 (321-399)||(31686277-31686355)
chr8 (71-143)||(37957980-37958052)
chr8 (317-384)||(1590561-1590628)
chr8 (323-384)||(27342547-27342608)
chr8 (318-374)||(3759042-3759099)
chr8 (318-376)||(4784886-4784944)
chr8 (318-374)||(40519900-40519957)
[»] chr7 (10 HSPs)
chr7 (317-399)||(38154077-38154159)
chr7 (321-376)||(12092874-12092929)
chr7 (319-376)||(17116247-17116305)
chr7 (317-376)||(1279302-1279361)
chr7 (317-376)||(41529585-41529644)
chr7 (325-376)||(37440375-37440425)
chr7 (318-376)||(13636677-13636735)
chr7 (318-376)||(13697866-13697924)
chr7 (317-374)||(36156035-36156092)
chr7 (318-374)||(43026157-43026213)
[»] chr3 (10 HSPs)
chr3 (317-374)||(31050873-31050930)
chr3 (317-376)||(43797158-43797217)
chr3 (323-384)||(35583594-35583655)
chr3 (318-352)||(11452768-11452802)
chr3 (317-374)||(3694556-3694613)
chr3 (325-390)||(9663174-9663239)
chr3 (318-387)||(18690505-18690574)
chr3 (318-366)||(630080-630128)
chr3 (323-375)||(2573228-2573280)
chr3 (318-374)||(8074474-8074530)
[»] chr6 (13 HSPs)
chr6 (325-384)||(13390117-13390176)
chr6 (318-376)||(3534212-3534270)
chr6 (325-382)||(11324656-11324713)
chr6 (318-369)||(11012640-11012691)
chr6 (325-374)||(18031633-18031682)
chr6 (325-390)||(32528748-32528813)
chr6 (317-374)||(34017838-34017895)
chr6 (318-389)||(6359753-6359825)
chr6 (318-376)||(2682960-2683018)
chr6 (317-390)||(31453877-31453951)
chr6 (325-374)||(15819254-15819303)
chr6 (317-370)||(19153181-19153233)
chr6 (327-383)||(6558814-6558870)
[»] chr2 (4 HSPs)
chr2 (318-370)||(34443875-34443927)
chr2 (325-382)||(31640428-31640485)
chr2 (317-376)||(21563612-21563671)
chr2 (317-376)||(37120738-37120797)
[»] chr5 (7 HSPs)
chr5 (317-376)||(11721788-11721847)
chr5 (331-374)||(17971722-17971765)
chr5 (325-376)||(37645183-37645234)
chr5 (317-376)||(37826858-37826917)
chr5 (318-375)||(18968055-18968112)
chr5 (318-370)||(30722365-30722418)
chr5 (317-345)||(22565398-22565426)
[»] chr1 (8 HSPs)
chr1 (318-399)||(5958172-5958254)
chr1 (333-390)||(29641878-29641935)
chr1 (318-374)||(9485047-9485103)
chr1 (318-376)||(22583003-22583061)
chr1 (323-392)||(23782731-23782801)
chr1 (317-373)||(25530245-25530301)
chr1 (318-374)||(42477969-42478025)
chr1 (325-376)||(14490580-14490631)
[»] chr4 (8 HSPs)
chr4 (317-376)||(25197742-25197801)
chr4 (318-374)||(40435345-40435401)
chr4 (321-376)||(16584622-16584677)
chr4 (325-376)||(45680088-45680139)
chr4 (317-363)||(26055111-26055157)
chr4 (318-387)||(5761173-5761242)
chr4 (317-366)||(26108352-26108401)
chr4 (317-345)||(22653516-22653544)
[»] scaffold0003 (1 HSPs)
scaffold0003 (318-374)||(291192-291249)


Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 37 - 397
Target Start/End: Complemental strand, 37929641 - 37929281
Alignment:
Q  37 cccgtattcctatgattcgaacagcagccggctcgaggagcaacaaggattggattttttcaatatgcttttcaattcctatcattccttcataatcact 136  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37929641 cccgtattcctatgattcgaacagtagccgactcgaggagcaacaaggattggattttttcaatatgcttttcaattcctatcattccttcataatcact 37929542  T
Q  137 taagacacgatgattcaattttctcaaaatatctttcacaatctctgcaagtgtgtgttctagtatggcacataataaaaaacagtacaacgttagtctt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  37929541 taagacacgatgattcaattttctcaaaatatctttcacaatctctgtaagtgtgtgttctggtctggcacataataaaaaacagtacaacgttagtctt 37929442  T
Q  237 tttatacaaaataaccgaaaggaaaacaaggagttaataagaaaaagcaccattatagattcacacttatannnnnnnnngaagaggctaaaatggaata 336  Q
     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||    
T  37929441 ctcatacaaaataaccgaaaggaaaacaaggagttaataagaaaaagcaccattatagattcacacttatatatttttttgaagaggctaaaatggaata 37929342  T
Q  337 tattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaagacaaacaatgtc 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37929341 tattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaagacaaacaatgtc 37929281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 321 - 399
Target Start/End: Original strand, 31686277 - 31686355
Alignment:
Q  321 aggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaagacaaacaatgtcga 399  Q
    |||||||||||||||||||||  | || |||||||||||||||||||||||||||||||||||||||||| || |||||    
T  31686277 aggctaaaatggaatatattaatatcttaaaaagtctttcctagcacaaggtgtacataggaaagacaaataacgtcga 31686355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 37957980 - 37958052
Alignment:
Q  71 gaggagcaacaaggattggattttttcaatatgcttttcaattcctatcattccttcataatcacttaagaca 143  Q
    |||||||||||||| |||||||  |||||||||||  |||||||| |||||||||||||| ||||||||||||    
T  37957980 gaggagcaacaagggttggattcgttcaatatgctcgtcaattccaatcattccttcatactcacttaagaca 37958052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 384
Target Start/End: Complemental strand, 1590628 - 1590561
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaa 384  Q
    ||||| ||||||||||||||||||| |||| ||||| ||||||||||||| ||||||| || ||||||    
T  1590628 gaagaagctaaaatggaatatattatcaacacaaaatgtctttcctagcataaggtgtgcaaaggaaa 1590561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 27342547 - 27342608
Alignment:
Q  323 gctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaa 384  Q
    ||||||||| ||||||||| |||| ||||| ||||||||||||||||||||| || ||||||    
T  27342547 gctaaaatgaaatatattatcaacacaaaatgtctttcctagcacaaggtgtgcaaaggaaa 27342608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 3759099 - 3759042
Alignment:
Q  318 aagaggctaaaatggaatatatta-ccaactcaaaaagtctttcctagcacaaggtgt 374  Q
    |||||||||||||||||||||||| |||| ||||| |||  |||||||||||||||||    
T  3759099 aagaggctaaaatggaatatattacccaaatcaaagagttcttcctagcacaaggtgt 3759042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 4784944 - 4784886
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    |||||||||||||||||||||||||||| |||||  | | ||||||| | |||||||||    
T  4784944 aagaggctaaaatggaatatattaccaaatcaaagtgaccttcctagtataaggtgtac 4784886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 40519957 - 40519900
Alignment:
Q  318 aagaggctaaaatggaatatattac-caactcaaaaagtctttcctagcacaaggtgt 374  Q
    ||||| ||||||| ||||||||||  |||| ||||||||| |||||||||||||||||    
T  40519957 aagagactaaaatagaatatattaatcaacacaaaaagtccttcctagcacaaggtgt 40519900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 38154159 - 38154077
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaagacaaacaatgtcga 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  38154159 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaggacaaacaacgtcga 38154077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 12092929 - 12092874
Alignment:
Q  321 aggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    ||||||||||||||||||||||||| |||||| ||  |||||||||||||||||||    
T  12092929 aggctaaaatggaatatattaccaaatcaaaatgttcttcctagcacaaggtgtac 12092874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 376
Target Start/End: Original strand, 17116247 - 17116305
Alignment:
Q  319 agaggctaaaatggaatatattaccaactcaaaa-agtctttcctagcacaaggtgtac 376  Q
    ||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  17116247 agaggctaagatggaatatattaccaaatcaaaagtgtctttcctagcacaaggtgtac 17116305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 1279361 - 1279302
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    ||||||| ||||||| ||||||||||||| |||||| ||| |||||| ||||||||||||    
T  1279361 gaagaggttaaaatgaaatatattaccaaatcaaaatgtccttcctaacacaaggtgtac 1279302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 41529644 - 41529585
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    ||||| |||||||||||||||||||| || ||||  |||| |||||||||||||||||||    
T  41529644 gaagaagctaaaatggaatatattacgaaatcaatgagtccttcctagcacaaggtgtac 41529585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 376
Target Start/End: Original strand, 37440375 - 37440425
Alignment:
Q  325 taaaatggaatatattaccaactcaaaaag-tctttcctagcacaaggtgtac 376  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  37440375 taaaatggaatatattaccaa--caaaaagttctttcctagcacaaggtgtac 37440425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 13636677 - 13636735
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    ||||||||||||||  |||||||||||| |||||| ||  ||||||| |||||||||||    
T  13636677 aagaggctaaaatgagatatattaccaaatcaaaatgttcttcctagtacaaggtgtac 13636735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 13697866 - 13697924
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    ||||||||||||||  |||||||||||| |||||| ||  ||||||| |||||||||||    
T  13697866 aagaggctaaaatgagatatattaccaaatcaaaatgttcttcctagtacaaggtgtac 13697924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 36156035 - 36156092
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgt 374  Q
    ||||||||||||||| ||||||||||||  |||| ||| | ||| |||||||||||||    
T  36156035 gaagaggctaaaatgaaatatattaccacatcaacaagaccttcttagcacaaggtgt 36156092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 43026157 - 43026213
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgt 374  Q
    |||||||||||||| | ||||||||||  ||||||| |  |||||||||||||||||    
T  43026157 aagaggctaaaatgaattatattaccacatcaaaaacttcttcctagcacaaggtgt 43026213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 31050930 - 31050873
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgt 374  Q
    ||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||    
T  31050930 gaagaggctaaaatgaaatatattaccaactcaaaatgtccttcctagcacaaggtgt 31050873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 43797158 - 43797217
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    ||||||||||||||||||||||||||||| |||||  ||  |||||||||||||||||||    
T  43797158 gaagaggctaaaatggaatatattaccaaatcaaagtgttcttcctagcacaaggtgtac 43797217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 35583655 - 35583594
Alignment:
Q  323 gctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaa 384  Q
    ||||||||||||||||||| |||| ||||| |||||| |||||||||||||| || ||||||    
T  35583655 gctaaaatggaatatattatcaacacaaaatgtcttttctagcacaaggtgtgcaaaggaaa 35583594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 352
Target Start/End: Original strand, 11452768 - 11452802
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaa 352  Q
    |||||||||||||||||||||||||||||||||||    
T  11452768 aagaggctaaaatggaatatattaccaactcaaaa 11452802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 3694556 - 3694613
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgt 374  Q
    ||||||||||||||| ||||||||||||  |||| |||   |||||||||||||||||    
T  3694556 gaagaggctaaaatgaaatatattaccacatcaataaggtcttcctagcacaaggtgt 3694613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 9663239 - 9663174
Alignment:
Q  325 taaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaagacaaa 390  Q
    ||||||| ||||||||| ||||   |||||||||||||| |||||||||| || |||||| |||||    
T  9663239 taaaatgaaatatattatcaacctcaaaagtctttcctatcacaaggtgtgcagaggaaaaacaaa 9663174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 18690574 - 18690505
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaagac 387  Q
    ||||||||||||||||||||||||| || ||||| || | ||||||  ||||||| |||  |||||||||    
T  18690574 aagaggctaaaatggaatatattactaaatcaaagaggccttcctaatacaaggtttactaaggaaagac 18690505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 630128 - 630080
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagca 366  Q
    |||||||||||||| |||||||||||| |  ||||||||||| ||||||    
T  630128 aagaggctaaaatgaaatatattaccaccataaaaagtcttttctagca 630080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 375
Target Start/End: Original strand, 2573228 - 2573280
Alignment:
Q  323 gctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgta 375  Q
    ||||||||| ||||||||| |||| ||| ||||  ||||||||||||||||||    
T  2573228 gctaaaatgaaatatattatcaacacaataagttgttcctagcacaaggtgta 2573280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 8074474 - 8074530
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgt 374  Q
    |||||||| ||||| | ||||||||||  ||||||||||||||| | ||||||||||    
T  8074474 aagaggctcaaatgaattatattaccacatcaaaaagtctttcccaacacaaggtgt 8074530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 13390117 - 13390176
Alignment:
Q  325 taaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaa 384  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||| || ||||||    
T  13390117 taaaatggaatatattatcaactcaaaatgtctttcctagcacaaggtgtgcaaaggaaa 13390176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 3534212 - 3534270
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    |||||||||||||||||||||||||||| | |||  |||||||||||||||||||||||    
T  3534212 aagaggctaaaatggaatatattaccaaattaaagtgtctttcctagcacaaggtgtac 3534270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 11324713 - 11324656
Alignment:
Q  325 taaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacatagga 382  Q
    |||||||||||||||||| || |||||  ||||||||||||||||| |||||||||||    
T  11324713 taaaatggaatatattacgaaatcaaagtgtctttcctagcacaagatgtacatagga 11324656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 11012691 - 11012640
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaa 369  Q
    |||||||| ||||||||||||||||||| |||||| || |||||||||||||    
T  11012691 aagaggcttaaatggaatatattaccaaatcaaaatgtgtttcctagcacaa 11012640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 18031633 - 18031682
Alignment:
Q  325 taaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgt 374  Q
    |||||| |||||||||| |||| ||| |||||||||||||||||||||||    
T  18031633 taaaatagaatatattatcaacacaacaagtctttcctagcacaaggtgt 18031682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 390
Target Start/End: Original strand, 32528748 - 32528813
Alignment:
Q  325 taaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaagacaaa 390  Q
    ||||||||||||||||| ||||   |||||||||| |||||||||||||| || |||||| |||||    
T  32528748 taaaatggaatatattatcaacctcaaaagtcttttctagcacaaggtgtgcagaggaaaaacaaa 32528813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 374
Target Start/End: Original strand, 34017838 - 34017895
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgt 374  Q
    ||||||||||||||| ||||||||||||| ||||| ||||  ||||||||||| ||||    
T  34017838 gaagaggctaaaatgaaatatattaccaaatcaaagagtcaatcctagcacaaagtgt 34017895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 6359753 - 6359825
Alignment:
Q  318 aagaggctaaaatggaatat-attaccaactcaaaaagtctttcctagcacaaggtgtacataggaaagacaa 389  Q
    |||| ||||||||||||||| |||| |||| | ||||||||||||||||| ||||||| || |||||| ||||    
T  6359753 aagaagctaaaatggaatattattatcaacaccaaaagtctttcctagcataaggtgtgcagaggaaaaacaa 6359825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 2683018 - 2682960
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    |||||| ||||||  ||||||||||||||  |||  |||||||||||||||||||||||    
T  2683018 aagaggttaaaataaaatatattaccaacaaaaagtgtctttcctagcacaaggtgtac 2682960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 31453877 - 31453951
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaa-gtctttcctagcacaaggtgtacataggaaagacaaa 390  Q
    ||||| ||||||||| ||||||||| |||| |||||| || ||||||||||||| |||| |||| |||| |||||    
T  31453877 gaagaagctaaaatgaaatatattatcaacacaaaaatgtatttcctagcacaatgtgtgcataagaaaaacaaa 31453951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 374
Target Start/End: Original strand, 15819254 - 15819303
Alignment:
Q  325 taaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgt 374  Q
    ||||||||||||||||| |||| | |||||||||||||| ||| ||||||    
T  15819254 taaaatggaatatattatcaacaccaaaagtctttcctaccactaggtgt 15819303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 370
Target Start/End: Original strand, 19153181 - 19153233
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaag 370  Q
    ||||||||||||||| ||||||||||||| |||||| || |||| |||||||||    
T  19153181 gaagaggctaaaatgaaatatattaccaaatcaaaatgt-tttcttagcacaag 19153233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 383
Target Start/End: Original strand, 6558814 - 6558870
Alignment:
Q  327 aaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaa 383  Q
    ||||| ||||||||| |||| | ||||| |||||| |||||||||||| ||||||||    
T  6558814 aaatgaaatatattatcaacaccaaaagcctttccaagcacaaggtgtgcataggaa 6558870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 34443927 - 34443875
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaag 370  Q
    |||||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  34443927 aagaggctaaaatggaatatattaccaaatcaaaatgtttttcctagcacaag 34443875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 382
Target Start/End: Complemental strand, 31640485 - 31640428
Alignment:
Q  325 taaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacatagga 382  Q
    ||||||||||||||||||||| |||||  ||||||||||| ||||| |||||| ||||    
T  31640485 taaaatggaatatattaccaaatcaaagtgtctttcctagtacaagatgtacaaagga 31640428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 21563671 - 21563612
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    |||||||||||||||||||||| ||| || |||||| ||  |||||| ||||||||||||    
T  21563671 gaagaggctaaaatggaatataatactaaatcaaaatgttcttcctaacacaaggtgtac 21563612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 376
Target Start/End: Original strand, 37120738 - 37120797
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    |||||||||||||||||||||||||| || ||||| |||  | ||||||||||| |||||    
T  37120738 gaagaggctaaaatggaatatattactaaatcaaagagttctacctagcacaagatgtac 37120797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 11721847 - 11721788
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    |||||||||||||| |||||||||| ||| |||||| || ||||||||||||||||||||    
T  11721847 gaagaggctaaaatagaatatattatcaaatcaaaatgtttttcctagcacaaggtgtac 11721788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 374
Target Start/End: Original strand, 17971722 - 17971765
Alignment:
Q  331 ggaatatattaccaactcaaaaagtctttcctagcacaaggtgt 374  Q
    ||||||||||| |||| ||||||||| |||||||||||||||||    
T  17971722 ggaatatattatcaacacaaaaagtccttcctagcacaaggtgt 17971765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 376
Target Start/End: Complemental strand, 37645234 - 37645183
Alignment:
Q  325 taaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    |||||||||||||||||| || ||||  |||||||||||||||||| |||||    
T  37645234 taaaatggaatatattacgaaatcaatgagtctttcctagcacaagatgtac 37645183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 37826917 - 37826858
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    ||||| |||||||||||||||||||| || | ||  |||||||||||||||||| |||||    
T  37826917 gaagaagctaaaatggaatatattacgaaattaatgagtctttcctagcacaagatgtac 37826858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 375
Target Start/End: Complemental strand, 18968112 - 18968055
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgta 375  Q
    ||||||||||||||||||||||||| || |||||| ||| ||| ||| | ||||||||    
T  18968112 aagaggctaaaatggaatatattacaaaatcaaaatgtccttcttagtataaggtgta 18968055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 370
Target Start/End: Original strand, 30722365 - 30722418
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaa-agtctttcctagcacaag 370  Q
    |||| ||||||||| | |||||||||| ||||||| ||||||||||||||||||    
T  30722365 aagaagctaaaatgaattatattaccacctcaaaagagtctttcctagcacaag 30722418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 345
Target Start/End: Complemental strand, 22565426 - 22565398
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaa 345  Q
    |||||||||||||||||||||||||||||    
T  22565426 gaagaggctaaaatggaatatattaccaa 22565398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 5958172 - 5958254
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaag-tctttcctagcacaaggtgtacataggaaagacaaacaatgtcga 399  Q
    |||||| |||||| |||||||||| |||||||||||| | |||  ||||| |||||||| ||||||||||||||||| |||||    
T  5958172 aagaggttaaaattgaatatattatcaactcaaaaagtttttttttagcataaggtgtatataggaaagacaaacaaagtcga 5958254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 29641878 - 29641935
Alignment:
Q  333 aatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaagacaaa 390  Q
    ||||||||| |||||||||| ||||||||||||||||||||| || |||||| |||||    
T  29641878 aatatattatcaactcaaaatgtctttcctagcacaaggtgtgcaaaggaaaaacaaa 29641935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 9485103 - 9485047
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgt 374  Q
    ||||| |||||||||||||||||||||| | |||| ||| |||||||||||||||||    
T  9485103 aagagcctaaaatggaatatattaccaaattaaaatgtccttcctagcacaaggtgt 9485047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 376
Target Start/End: Original strand, 22583003 - 22583061
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    ||||||||||||||||||||||||| || |||||| ||  |||||||||||| ||||||    
T  22583003 aagaggctaaaatggaatatattacaaaatcaaaatgttcttcctagcacaaagtgtac 22583061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 23782801 - 23782731
Alignment:
Q  323 gctaaaatggaatatattaccaactc-aaaaagtctttcctagcacaaggtgtacataggaaagacaaaca 392  Q
    ||||||||||||||||||| |||| | ||||||||||||||| ||||||| || || |||||| |||||||    
T  23782801 gctaaaatggaatatattatcaacaccaaaaagtctttcctaacacaaggagtgcagaggaaaaacaaaca 23782731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 25530301 - 25530245
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtg 373  Q
    ||||||||||||||| ||||||||||||| |||||| |   ||||||||||||||||    
T  25530301 gaagaggctaaaatgaaatatattaccaaatcaaaatggtcttcctagcacaaggtg 25530245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 42478025 - 42477969
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgt 374  Q
    |||||||||||||| |||||| ||||||| ||||| ||| ||||||||| |||||||    
T  42478025 aagaggctaaaatgaaatataataccaacacaaaatgtcattcctagcataaggtgt 42477969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 376
Target Start/End: Original strand, 14490580 - 14490631
Alignment:
Q  325 taaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    |||||||||||||||||| || ||||  |||||||||||||||||| |||||    
T  14490580 taaaatggaatatattacgaaatcaatgagtctttcctagcacaagatgtac 14490631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 376
Target Start/End: Complemental strand, 25197801 - 25197742
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    ||||||||||||||| ||||||||||| | |||||| ||  |||||||||||||||||||    
T  25197801 gaagaggctaaaatgaaatatattacccaatcaaaatgttcttcctagcacaaggtgtac 25197742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 40435401 - 40435345
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgt 374  Q
    ||||| |||||||||||||||||| |||| ||||||||  || ||||||||||||||    
T  40435401 aagagactaaaatggaatatattatcaacacaaaaagttctttctagcacaaggtgt 40435345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 16584677 - 16584622
Alignment:
Q  321 aggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    ||||||||||| ||||||||||  | |||||||||  |||||||||||||||||||    
T  16584677 aggctaaaatgaaatatattacttaatcaaaaagttcttcctagcacaaggtgtac 16584622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 376
Target Start/End: Original strand, 45680088 - 45680139
Alignment:
Q  325 taaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtac 376  Q
    ||||||||||||||||| ||| |||||| ||  |||||||||||||||||||    
T  45680088 taaaatggaatatattatcaaatcaaaatgttcttcctagcacaaggtgtac 45680139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 26055157 - 26055111
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttccta 363  Q
    ||||||||||||||| |||||||||||| | ||||||||| ||||||    
T  26055157 gaagaggctaaaatgaaatatattaccatcacaaaaagtccttccta 26055111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 387
Target Start/End: Complemental strand, 5761242 - 5761173
Alignment:
Q  318 aagaggctaaaatggaatatattaccaactcaaaaagtctttcctagcacaaggtgtacataggaaagac 387  Q
    ||||||||||||||||||||||||| || ||||| || | ||||||  ||||||| |||  |||||||||    
T  5761242 aagaggctaaaatggaatatattactaaatcaaagaggccttcctaatacaaggtttactaaggaaagac 5761173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 26108401 - 26108352
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaactcaaaaagtctttcctagca 366  Q
    ||||||||||||||| |||||||||||| | |||||| || |||||||||    
T  26108401 gaagaggctaaaatgaaatatattaccaccacaaaaactcattcctagca 26108352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 345
Target Start/End: Complemental strand, 22653544 - 22653516
Alignment:
Q  317 gaagaggctaaaatggaatatattaccaa 345  Q
    |||||||||||||||||||||||||||||    
T  22653544 gaagaggctaaaatggaatatattaccaa 22653516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 374
Target Start/End: Complemental strand, 291249 - 291192
Alignment:
Q  318 aagaggctaaaatggaatatattac-caactcaaaaagtctttcctagcacaaggtgt 374  Q
    ||||| ||||||||||||||||||| ||| ||||| |||  |||||||||||||||||    
T  291249 aagagactaaaatggaatatattactcaaatcaaagagttcttcctagcacaaggtgt 291192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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