View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_19 (Length: 392)
Name: NF7987_low_19
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_19 |
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| [»] scaffold0707 (2 HSPs) |
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Alignment Details
Target: scaffold0707 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: scaffold0707
Description:
Target: scaffold0707; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 99 - 378
Target Start/End: Complemental strand, 2144 - 1865
Alignment:
| Q |
99 |
gtatttgttcgaaacagggatgtccctaggcttagaaacatgcttgtctcaattcaagatggggagtatatggcactgtttgcatttgatataattcttt |
198 |
Q |
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| T |
2144 |
gtatttgttcgaaacagggatgtccctaggcttagaaacatgcttgtctcaattcaagatgggaagtatatggcactgtttgcatttgatataattcttt |
2045 |
T |
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| Q |
199 |
acttaaaatggaacgatggacttgctcagattagactaaagtaattatatcattgatgtaatcaagttcatgttcttggaaggaaactttgtaatactta |
298 |
Q |
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| T |
2044 |
acttaaaatggaacgatggacttgctcagattagactaaagtaattatatcattgatgtaatcaagttcatgttcttggaaggaaactttgtaatactta |
1945 |
T |
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| Q |
299 |
acatgatgttttgaaattaacataaaacagatatctatatcaaaataaattgttttacaaattttgtatgagtacaatct |
378 |
Q |
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| T |
1944 |
acatgatgttttgaaattaacataaaacagatatctatatcaaaataaattgttttacaaattttgtatgagtacaatct |
1865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0707; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 2277 - 2208
Alignment:
| Q |
17 |
agacagataatagttgaggccat-attttccgaatatatgccggttatcatatctgtgtttctctctctc |
85 |
Q |
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| T |
2277 |
agacagctaaaagttgaggccattattttccgaatatgtgccggttatcatatctgtgtttctctatctc |
2208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 99 - 378
Target Start/End: Original strand, 33571648 - 33571927
Alignment:
| Q |
99 |
gtatttgttcgaaacagggatgtccctaggcttagaaacatgcttgtctcaattcaagatggggagtatatggcactgtttgcatttgatataattcttt |
198 |
Q |
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| T |
33571648 |
gtatttgttcgaaacagggatgtccctaggcttagaaacatgcttgtctcaattcaagatgggaagtatatggcactgtttgcatttgatataattcttt |
33571747 |
T |
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| Q |
199 |
acttaaaatggaacgatggacttgctcagattagactaaagtaattatatcattgatgtaatcaagttcatgttcttggaaggaaactttgtaatactta |
298 |
Q |
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| T |
33571748 |
acttaaaatggaacgatggacttgctcagattagactaaagtaattatatcattgatgtaatcaagttcatgttcttggaaggaaactttgtaatactta |
33571847 |
T |
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| Q |
299 |
acatgatgttttgaaattaacataaaacagatatctatatcaaaataaattgttttacaaattttgtatgagtacaatct |
378 |
Q |
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| T |
33571848 |
acatgatgttttgaaattaacataaaacagatatctatatcaaaataaattgttttacaaattttgtatgagtacaatct |
33571927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 33571503 - 33571571
Alignment:
| Q |
17 |
agacagataatagttgaggccatattttccgaatatatgccggttatcatatctgtgtttctctctctc |
85 |
Q |
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| T |
33571503 |
agacagctaaaagttgaggccatattttccgaatatgtgccggttatcatatctgtgtttctctatctc |
33571571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 40752774 - 40752818
Alignment:
| Q |
25 |
aatagttgaggccatattttccgaatatatgccggttatcatatc |
69 |
Q |
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| T |
40752774 |
aatagttgaggccatattttccgagtgtgtgccggtgatcatatc |
40752818 |
T |
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