View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7987_low_21 (Length: 381)

Name: NF7987_low_21
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7987_low_21
NF7987_low_21
[»] chr3 (13 HSPs)
chr3 (15-365)||(33397183-33397533)
chr3 (95-300)||(27004896-27005101)
chr3 (221-312)||(36876466-36876557)
chr3 (227-281)||(33093071-33093125)
chr3 (15-64)||(33708401-33708450)
chr3 (95-268)||(36810180-36810353)
chr3 (247-300)||(37579955-37580008)
chr3 (166-274)||(33708173-33708281)
chr3 (15-66)||(33714265-33714316)
chr3 (125-274)||(33714039-33714188)
chr3 (15-68)||(36876237-36876290)
chr3 (330-363)||(27004833-27004866)
chr3 (15-68)||(36810396-36810449)
[»] chr7 (2 HSPs)
chr7 (194-287)||(18723550-18723643)
chr7 (20-72)||(18723712-18723764)


Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 15 - 365
Target Start/End: Original strand, 33397183 - 33397533
Alignment:
Q  15 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatgaagaaatatccttacggcatgtaagtgagaaagaattcaaagttgg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33397183 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatggagtatgaagaaatatccttacggcatgtaagtgagaaagaattcaaagttgg 33397282  T
Q  115 tctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacacagttcatacacaatagaaaa 214  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33397283 tctctgacatattgcagaagcaagaccatcatgtgatagcaaatggcattggaacataaccaactcttgtagaaacacacagttcatacacaatagaaaa 33397382  T
Q  215 aaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcagagcattattataattgtcgc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  33397383 aaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcaaagcattattataattgtcac 33397482  T
Q  315 tgtcattggtgattattttagggtaactgatatccaattgttggaggaaag 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33397483 tgtcattggtgattattttagggtaactgatatccaattgttggaggaaag 33397533  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 95 - 300
Target Start/End: Complemental strand, 27005101 - 27004896
Alignment:
Q  95 gagaaagaattcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacac 194  Q
    ||||||||||||||||| ||||||||    ||||||||||||| ||||||| ||| ||| || ||||| | ||||||||  || | ||||||||||  ||    
T  27005101 gagaaagaattcaaagtgggtctctggtagattgcagaagcaataccatcatgtgttaggaattggcaatcgaacataaaaacttgttgtagaaacttac 27005002  T
Q  195 agttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcag 294  Q
    |||| | ||| | | |||||||    |||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||  ||    
T  27005001 agttgacacatagttgaaaaaacaaagagtcattaaagtaggaatgaccagagagattaacattgcggagttttgaaagcttttgagtaagaagctgtag 27004902  T
Q  295 agcatt 300  Q
    ||||||    
T  27004901 agcatt 27004896  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 36876466 - 36876557
Alignment:
Q  221 gagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaagcttcagagcattattataattgtc 312  Q
    |||||||||| |||||||| |||||||| |||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||| ||||    
T  36876466 gagtcattaatgtagaaattaccagagaaattaaccttgcgaagttttgaaagcctttgagtaagaagctttagagcattattataagtgtc 36876557  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 33093125 - 33093071
Alignment:
Q  227 ttaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgag 281  Q
    ||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||||    
T  33093125 ttaacatagaaattacctgagagattaaccttgcggagttttaaaagcttttgag 33093071  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 33708450 - 33708401
Alignment:
Q  15 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaag 64  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||||||||    
T  33708450 acaaatcaagacaagttaagcgcttcaaactcatcaatgaatcaatgaag 33708401  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 268
Target Start/End: Complemental strand, 36810353 - 36810180
Alignment:
Q  95 gagaaagaattcaaagttggtctctgacgtattgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacac 194  Q
    |||| |||||||||||| |||||||| |  ||||||| ||||| |||| |||||| ||| ||| |||| | ||||||||||||||||| || || | |||    
T  36810353 gagagagaattcaaagtgggtctctggcaaattgcagtagcaataccagcacgtgttaggaaagggcaatcgaacataaccacctcttctaaaagctcac 36810254  T
Q  195 agttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagtttt 268  Q
    ||||| | |||| |   |||||    || |||| ||  ||||||| ||||||||| ||||||||| ||||||||    
T  36810253 agttcctgcacagttccaaaaacaatgaatcatcaatatagaaattaccagagaggttaaccttgtggagtttt 36810180  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 37580008 - 37579955
Alignment:
Q  247 gagattaaccttgcggagttttgaaagcttttgagtgagaagcttcagagcatt 300  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||    
T  37580008 gagattaaccttgcagagttttgaaagcttttgagtaagaacctttagagcatt 37579955  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 166 - 274
Target Start/End: Complemental strand, 33708281 - 33708173
Alignment:
Q  166 gaacataaccacctcttgtagaaacacacagttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagt 265  Q
    |||||||| ||||||||| ||||||   ||||||||||| |   |||||||    |||||||| |||||| ||| ||| |||||||||||||| ||||||    
T  33708281 gaacataagcacctcttggagaaacttgcagttcatacatagctgaaaaaacaatgagtcatttacgtaggaattaccggagagattaaccttacggagt 33708182  T
Q  266 tttgaaagc 274  Q
    |||||||||    
T  33708181 tttgaaagc 33708173  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 33714316 - 33714265
Alignment:
Q  15 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagta 66  Q
    ||||||||||||||||||| | ||| ||||||| ||||||||||||||||||    
T  33714316 acaaatcaagacaagttaagcgctttaaactcaccaatgaatcaatgaagta 33714265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 274
Target Start/End: Complemental strand, 33714188 - 33714039
Alignment:
Q  125 attgcagaagcaagaccatcacgtgatagcaaatggcattggaacataaccacctcttgtagaaacacacagttcatacacaatagaaaaaaggtggagt 224  Q
    ||||||||||||| |||| || ||| ||   || |||||| | |||||||||||||||  ||||||   ||||||||||| |   |||||||    ||||    
T  33714188 attgcagaagcaataccagcatgtgttatggaacggcatttgtacataaccacctctttgagaaacttgcagttcatacatagctgaaaaaacaacgagt 33714089  T
Q  225 cattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagc 274  Q
    |||| || ||| ||| |||||||||||||||||| ||||||| |||||||    
T  33714088 catttacataggaattaccagagagattaaccttacggagttctgaaagc 33714039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 36876237 - 36876290
Alignment:
Q  15 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatg 68  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||  |||||||    
T  36876237 acaaatcaagacaagttaatcccttcaaactccacaatgaatcaacaaagtatg 36876290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 363
Target Start/End: Complemental strand, 27004866 - 27004833
Alignment:
Q  330 ttttagggtaactgatatccaattgttggaggaa 363  Q
    |||||||| |||||||||||||||||||||||||    
T  27004866 ttttagggaaactgatatccaattgttggaggaa 27004833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 36810449 - 36810396
Alignment:
Q  15 acaaatcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatg 68  Q
    |||||||| |||||||||||| ||||||||||  ||||||||||  ||||||||    
T  36810449 acaaatcatgacaagttaatcccttcaaactccccaatgaatcagcgaagtatg 36810396  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 287
Target Start/End: Complemental strand, 18723643 - 18723550
Alignment:
Q  194 cagttcatacacaatagaaaaaaggtggagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttgagtgagaa 287  Q
    ||||||||||||| | |||||||    || ||||||| ||||| || |||||| |||||||| |||||||||||||||||| ||||||| ||||    
T  18723643 cagttcatacacagttgaaaaaacaatgaatcattaatgtagatattaccagaaagattaactttgcggagttttgaaagcctttgagtaagaa 18723550  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 18723764 - 18723712
Alignment:
Q  20 tcaagacaagttaatctcttcaaactcagcaatgaatcaatgaagtatgaaga 72  Q
    |||||||||||||| | ||||||||||  ||||||||||||||||||||||||    
T  18723764 tcaagacaagttaagcgcttcaaactcgccaatgaatcaatgaagtatgaaga 18723712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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