View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7987_low_22 (Length: 380)
Name: NF7987_low_22
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 189 - 361
Target Start/End: Complemental strand, 12242868 - 12242697
Alignment:
| Q |
189 |
cattaatgttgtattcgtcttgtaaagcgatttataatttaacacannnnnnnaatgtgacatataataaaaatggaggagtacatttttcacaaaagaa |
288 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12242868 |
cattaatgttgtattcgtgttgtaaaacgatttataatttaacacatttttt-aatgtgacatataataaaaatggaggagtacatttttcacaaaagaa |
12242770 |
T |
|
| Q |
289 |
acaatttcgcaagagatataagataaggaaaatttactattcaaacggccaagacttgatcaaaatttattaa |
361 |
Q |
| |
|
||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12242769 |
acaatttcgtaagagagataagataacgaaaatttactattcaaacggccaagacttgatcaaaatttattaa |
12242697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 12243048 - 12242937
Alignment:
| Q |
10 |
tcaaaagagattcaatagaggaaatgatgtttgatgtagtttcgaagaagggaagagcatagacagggaagaggtcatgacagacttaagaagttatcat |
109 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| || ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
12243048 |
tcaaaagaggttcaatagaggaaatgatgcttgatggagcttcgaagaaggaaagagtatagacagggaataggtcatgacagacttaagaagttatcct |
12242949 |
T |
|
| Q |
110 |
ttattaatgtcg |
121 |
Q |
| |
|
|||||||||||| |
|
|
| T |
12242948 |
ttattaatgtcg |
12242937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 33260055 - 33259964
Alignment:
| Q |
12 |
aaaagagattcaatagaggaaatgatgtttgatgtagtttcgaagaagggaagagcatagacaggga-agaggtcatgacagacttaagaag |
102 |
Q |
| |
|
|||||||||||||||||| | ||||| ||| | || || |||||||| ||||||||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
33260055 |
aaaagagattcaatagagaagatgatacctgagggagctttgaagaaggaaagagcatagacagggagagagatcaagacagacttaagaag |
33259964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 33280214 - 33280123
Alignment:
| Q |
12 |
aaaagagattcaatagaggaaatgatgtttgatgtagtttcgaagaagggaagagcatagacaggga-agaggtcatgacagacttaagaag |
102 |
Q |
| |
|
|||||||||||||||||| | ||||| ||| | || || |||||||| ||||||||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
33280214 |
aaaagagattcaatagagaagatgatacctgagggagctttgaagaaggaaagagcatagacagggagagagatcaagacagacttaagaag |
33280123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 29133691 - 29133741
Alignment:
| Q |
53 |
gaagaagggaagagcatagacaggga-agaggtcatgacagacttaagaag |
102 |
Q |
| |
|
|||||||| |||||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
29133691 |
gaagaaggaaagagcatagacagagagagaggtcaagacagacttaagaag |
29133741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 41352612 - 41352527
Alignment:
| Q |
12 |
aaaagagattcaatagaggaaatgatgtttgatgtagtttcgaagaagggaagagcatagacagg-gaagaggtcatgacagactt |
96 |
Q |
| |
|
|||| ||| ||||||||||||||||| | ||| | | || |||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
41352612 |
aaaatagaatcaatagaggaaatgatatctgacggggctttgaagaagggaagagcatagacaggaaaagagggcatgatagactt |
41352527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 32900006 - 32899918
Alignment:
| Q |
12 |
aaaagagattcaatagaggaaatgatgtttgatgtagtttcgaagaagggaagagcatagacaggga-agaggtcatgacagacttaag |
99 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | ||| | |||||||| ||||| |||||||| | ||||||||||| |||||||| |
|
|
| T |
32900006 |
aaaagagattcaatagaggaaatgatacctgagggagtcttgaagaaggtaagagtgtagacaggaagagaggtcatgaatgacttaag |
32899918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 10289419 - 10289355
Alignment:
| Q |
12 |
aaaagagattcaatagaggaaatgatgtttgatgtagtttcgaagaagggaagagcatagacagg |
76 |
Q |
| |
|
||||||||||||||||||| ||||| |||| | || || |||||||| ||||||||||||||| |
|
|
| T |
10289419 |
aaaagagattcaatagaggcgatgatacttgagggagctttgaagaaggaaagagcatagacagg |
10289355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University