View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_25 (Length: 369)
Name: NF7987_low_25
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 26130238 - 26130569
Alignment:
| Q |
19 |
atggatagatacagaacatgcacaaataccagacatattaataatatcaatcaagtataattaaaaaatactaagcctccaattacagatattaaacatt |
118 |
Q |
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| T |
26130238 |
atggatagatacagaacatgcacaaataccagacatattaataatatcaatcaagtataattaaaaaatactaagcctccaattacagatattaaacatt |
26130337 |
T |
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| Q |
119 |
cacttacataatcattctcagagttgtacgaatcctcgtgttcttgaatttcatcttcagttgtcattggagattgtgtctgcccaacattgatgtgact |
218 |
Q |
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| T |
26130338 |
cacttacataatcattctcagagttgtacgaatcctcgtgttcctgaatttcatcttcagttgaaattggagattgtgtctgcccaacattgatgtgact |
26130437 |
T |
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| Q |
219 |
gatgcaagcaaacttggaccaccttggcataaccaagcactttggaagatcatcaaaatcaagatacaatagcacagctagaatatgatgacatggcaat |
318 |
Q |
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| T |
26130438 |
gatgcaagcaaacttggaccacctaggcataaccaagcactttggaagatcatcaaaatcaagatacaatagcacagatagaatatgatgacatggcaat |
26130537 |
T |
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| Q |
319 |
ccaattgattccattctaaaacatgagcattt |
350 |
Q |
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| T |
26130538 |
ccaattgattccattctaaaacatgagcattt |
26130569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 224 - 351
Target Start/End: Complemental strand, 11011150 - 11011023
Alignment:
| Q |
224 |
aagcaaacttggaccaccttggcataaccaagcactttggaagatcatcaaaatcaagatacaatagcacagctagaatatgatgacatggcaatccaat |
323 |
Q |
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| T |
11011150 |
aagcaaacttggaccacctttgcaaaaccaaacattttggaagatcatcaaaatcaagatacagaagaacaacaagaatatgatcacacagcaaaccaag |
11011051 |
T |
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| Q |
324 |
tgattccattctaaaacatgagcatttt |
351 |
Q |
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| T |
11011050 |
cgattccattctaagacacgagcatttt |
11011023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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