View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_27 (Length: 352)
Name: NF7987_low_27
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 8535747 - 8535950
Alignment:
| Q |
10 |
agtttggtgttgtgattatgttagatttttcattttatcaaaaccatgaaattggttttatatattcatatatggtgaatttcatatcaaccaatctaga |
109 |
Q |
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| T |
8535747 |
agtttggtgttgtgattatgttagatttttcattttatcaaaaccatgaaattggttttatatattcatatatggtgaatttcatatcaaccaatctaga |
8535846 |
T |
|
| Q |
110 |
cttatagtgattgattgatcaattgtaacaaatctttatattgaacataagttttaatatcaggagggttaacagatgaagggcatggcataacgtccca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8535847 |
cttatagtgattgattgatcaattgtaacaaatctttatattgaacataag-tttaatatcaggagggttaacagatgaagggcatagcataacgtccca |
8535945 |
T |
|
| Q |
210 |
tgttt |
214 |
Q |
| |
|
||||| |
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|
| T |
8535946 |
tgttt |
8535950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 211 - 334
Target Start/End: Original strand, 8535986 - 8536109
Alignment:
| Q |
211 |
gttttatagtttcttgccaacgttatgctgtatagcctgtttatatgaataaggattgagaacatatgctaaagttgctttcagagataagggtttagaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8535986 |
gttttatagtttcttgccaacgttatgctgtatagcctgtttatatgaataaggattgagaacatatgctaaagttgctttcagagataagggtttagaa |
8536085 |
T |
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| Q |
311 |
taatcatacttctctggtggttta |
334 |
Q |
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|||||||||||||||||||||||| |
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| T |
8536086 |
taatcatacttctctggtggttta |
8536109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 37395324 - 37395289
Alignment:
| Q |
48 |
caaaaccatgaaattggttttatatattcatatatg |
83 |
Q |
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| T |
37395324 |
caaaaccatgaaattggttttatatattcatatatg |
37395289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 5880087 - 5880180
Alignment:
| Q |
233 |
ttatgctgtatagcctgtttatatgaataaggattgagaacatatgctaaagttgctttcagagataagggtttagaataatcatacttctctg |
326 |
Q |
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||||||| |||||||||||||||||| ||||| | || |||||||||||||||| ||| |||||| |||||||||||| |||||||||||| |
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| T |
5880087 |
ttatgctccatagcctgtttatatgaaaaaggaataggagcatatgctaaagttgccgtcaaagataaaggtttagaataaccatacttctctg |
5880180 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 43510459 - 43510508
Alignment:
| Q |
48 |
caaaaccatgaaattggttttatatattcatatatggtgaatttcatatc |
97 |
Q |
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| T |
43510459 |
caaaaccatgaaattggttttatatattcatatatagtgaatttgatatc |
43510508 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 25061043 - 25061092
Alignment:
| Q |
48 |
caaaaccatgaaattggttttatatattcatatatggtgaatttcatatc |
97 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
25061043 |
caaaaccatgaaattggttttatatattcatatatagtgaatttgatatc |
25061092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 2445986 - 2445937
Alignment:
| Q |
48 |
caaaaccatgaaattggttttatatattcatatatggtgaatttcatatc |
97 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
2445986 |
caaaaccatgaaattggttttatatattcatatatagtgaatttgatatc |
2445937 |
T |
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