View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_28 (Length: 332)
Name: NF7987_low_28
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 44692648 - 44692347
Alignment:
| Q |
17 |
agatttaaccgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcaccatgagtccacacatgcccctccaaatcctccaataaattattt |
116 |
Q |
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| T |
44692648 |
agatttaactgtaaaattcccatcatcttcaagcttccaaacccaaacgtcttcaccatgagtccacacatgcccctccaaatcctccaataaattattt |
44692549 |
T |
|
| Q |
117 |
aacaattgttcctcccacacnnnnnnncgccactccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagaga |
216 |
Q |
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| T |
44692548 |
aacaattgttcctcccacacaaaaaaacgccactccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagaga |
44692449 |
T |
|
| Q |
217 |
acaatctaggatatttacctcgaaagggaactccacccctccatctcgcataccaaaacttagtattaaccccgttcctcaccttcctagccacctcttc |
316 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692448 |
acaatctagaatatttacctcgaaagggaactccacccctccatctcgcataccaaaacttagtattaaccccgttcctcaccttcctagccacctcttc |
44692349 |
T |
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| Q |
317 |
at |
318 |
Q |
| |
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|| |
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| T |
44692348 |
at |
44692347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 34866690 - 34866777
Alignment:
| Q |
146 |
ccactccaccaccggcccattattcacccccatattcgccaccatagcctctttttggtttgacatagagaacaatctaggatattta |
233 |
Q |
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| T |
34866690 |
ccactccaccatcggaccggtattcaccccaatctccgcaaccaatgcctctttttggttcgacatagagaataatctaggatattta |
34866777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 34866591 - 34866639
Alignment:
| Q |
65 |
gtcttcaccatgagtccacacatgcccctccaaatcctccaataaatta |
113 |
Q |
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||||||||| | || ||||||||||||||||||||| |||||||||||| |
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| T |
34866591 |
gtcttcaccgttagaccacacatgcccctccaaatcttccaataaatta |
34866639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 12830121 - 12830039
Alignment:
| Q |
177 |
atattcgccaccatagcctctttttggtttgacatagagaacaatctaggatatttacctcgaaagggaactccacccctcca |
259 |
Q |
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|||| ||||||||| ||||||||||||||| |||| | ||| ||||| ||||||||| | || |||| ||| ||||||||||| |
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| T |
12830121 |
atatccgccaccattgcctctttttggtttaacattgcgaataatcttggatatttatcacggaaggcaacaccacccctcca |
12830039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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