View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7987_low_29 (Length: 329)
Name: NF7987_low_29
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_29 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-172; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 5351508 - 5351820
Alignment:
| Q |
1 |
atcaagtctttcaagttattgttcttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5351508 |
atcaagtctttcaagttattgttcttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatc |
5351607 |
T |
|
| Q |
101 |
attgtagactgctctagccaattgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaacca |
200 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5351608 |
attgtagactgctctagctagttgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaacca |
5351707 |
T |
|
| Q |
201 |
tctatatccttgtccaaagcacatgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgttatcacgaattgttccacttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5351708 |
tctatatccttgtccaaagcacatgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgttatcacgaattgttccacttt |
5351807 |
T |
|
| Q |
301 |
gtatccatgatgt |
313 |
Q |
| |
|
||||||||||||| |
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|
| T |
5351808 |
gtatccatgatgt |
5351820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 24 - 307
Target Start/End: Original strand, 14949383 - 14949666
Alignment:
| Q |
24 |
cttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaatt |
123 |
Q |
| |
|
||||||| ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||| | | |
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|
| T |
14949383 |
cttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaagaagatagatatcagcatcattgtagactgctctagcaagct |
14949482 |
T |
|
| Q |
124 |
gaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagcaca |
223 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| ||| |||||||| || |||||||| |
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|
| T |
14949483 |
gaatcctttgcttttgtcctccactcatgttaatccctctctcacctatttctgtaagatcaccatggctaaaatcattgatatccttatctaaagcaca |
14949582 |
T |
|
| Q |
224 |
tgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgttatcacgaattgttccactttgtatcca |
307 |
Q |
| |
|
||||| ||||| ||||||||||| | | |||||| || ||||||||||| ||||| ||| |||||||||||||||||| |
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|
| T |
14949583 |
agctttaattgctttctcatatcttgttttgtccattgccttgccaaagagtatattatcttgaactgttccactttgtatcca |
14949666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 24 - 307
Target Start/End: Complemental strand, 15125992 - 15125709
Alignment:
| Q |
24 |
cttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaatt |
123 |
Q |
| |
|
||||||| ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||| | || |
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|
| T |
15125992 |
cttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaagaagatagatatcagcatcattgtagactgctctagctagtt |
15125893 |
T |
|
| Q |
124 |
gaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagcaca |
223 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||||| ||||||||| |||| |||||||| || |||||||| |
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|
| T |
15125892 |
gaatcctttgcttttgtcctccactcatgttaatccctctctcacctatttctgtaagatcaccgtggctaaaatcatcgatatccttatctaaagcaca |
15125793 |
T |
|
| Q |
224 |
tgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgttatcacgaattgttccactttgtatcca |
307 |
Q |
| |
|
||||| ||||| ||||||||||| | | |||||| || ||||| ||||| ||||| ||| |||||||||||||||||| |
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|
| T |
15125792 |
agctttaattgctttctcatatcttgttttgtccatttccttgccaaatagtatattatcttgaactgttccactttgtatcca |
15125709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 22 - 307
Target Start/End: Original strand, 5290218 - 5290503
Alignment:
| Q |
22 |
ttcttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaa |
121 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| ||||| | ||||||||||||||||||||||||||| | |
|
|
| T |
5290218 |
ttcttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatcagcatcattgtagactgctctagctag |
5290317 |
T |
|
| Q |
122 |
ttgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagca |
221 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||||| |||||||| || ||||||||||||||||||||||||||| ||| |||||||| || || ||| |
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|
| T |
5290318 |
ttgaatcctttgcttttgtcctccactcatgttaatccctctctgaccgatttctgtaagatcaccatggctaaaatcattgatatccttatctaaggca |
5290417 |
T |
|
| Q |
222 |
catgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgttatcacgaattgttccactttgtatcca |
307 |
Q |
| |
|
|| ||||| ||||| ||||||||||| | | |||||| || ||||||||||| || || ||| |||||||||||||||||| |
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|
| T |
5290418 |
caagctttgattgctttctcatatcttcttttatccattggcttgccaaagagtatattttcttgaactgttccactttgtatcca |
5290503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 5282633 - 5282856
Alignment:
| Q |
24 |
cttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaatt |
123 |
Q |
| |
|
||||||| ||||| |||||||| ||||| ||||| |||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||| | || |
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|
| T |
5282633 |
cttacattgaatagtattgcagctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagcatcattgtagactgctctagctagtt |
5282732 |
T |
|
| Q |
124 |
gaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagcaca |
223 |
Q |
| |
|
|||| ||||||||||| |||||||| | || | |||||||| |||||||||||||||||||||||||| ||| ||| |||||||| || || ||||| |
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|
| T |
5282733 |
gaatcctttgcttttgtcctccacttatattgatccctctctgacctatttctgtaagatcaccatggctgaaatcattgatatccttatctaaggcaca |
5282832 |
T |
|
| Q |
224 |
tgcttttattgcattctcatatct |
247 |
Q |
| |
|
||||| ||||| ||||||||||| |
|
|
| T |
5282833 |
agctttaattgctttctcatatct |
5282856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 36 - 307
Target Start/End: Complemental strand, 5313959 - 5313688
Alignment:
| Q |
36 |
agaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaattgaattctttgct |
135 |
Q |
| |
|
||||| ||||| || |||||||| || ||||| ||||| ||||| || ||||| | ||||||||||||||||||||||||||| | |||||| ||||||| |
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|
| T |
5313959 |
agaatagcagctgtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagcatcattgtagactgctctagctatttgaatcctttgct |
5313860 |
T |
|
| Q |
136 |
tttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagcacatgcttttattgc |
235 |
Q |
| |
|
| || |||||||| | ||||| |||||||| ||||||||||||||||| |||| ||||||| |||| |||||||| || || |||||| |||| || || |
|
|
| T |
5313859 |
tctgtcctccacttacgttaatccctctctgacctatttctgtaagatcgccatagctaaaatcatcaatatccttatctaaggcacatactttaatggc |
5313760 |
T |
|
| Q |
236 |
attctcatatctgttcctt-tccattaattttccaaagagtatgttatcacgaattgttccactttgtatcca |
307 |
Q |
| |
|
|||||||||| | ||| || |||||| || ||||||||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
5313759 |
attctcatat-ttttctttgtccattggcttgccaaagagtatattatctcgaactgttccactttgtatcca |
5313688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 307
Target Start/End: Complemental strand, 5306765 - 5306480
Alignment:
| Q |
22 |
ttcttacatgaaatagaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaa |
121 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| ||||| |||||||| ||||| |||||||| ||||| | ||| |||||| |||||||||||||||| | |
|
|
| T |
5306765 |
ttcttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatctgcatcactgtagactgctctagctag |
5306666 |
T |
|
| Q |
122 |
ttgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagca |
221 |
Q |
| |
|
|||||| || |||||||| |||||||||| || | |||||||| || ||||||||||||||||||||||| ||| ||| | ||||| || |||||| |
|
|
| T |
5306665 |
ttgaatcctctgcttttgtcctccactcatattgatccctctctggccaatttctgtaagatcaccatggctgaaatcattgaagtccttatctaaagca |
5306566 |
T |
|
| Q |
222 |
catgcttttattgcattctcatatctgttcctttccattaattttccaaagagtatgttatcacgaattgttccactttgtatcca |
307 |
Q |
| |
|
|| ||||| ||||| || | |||||| | | |||||| || ||||||||||| || || ||| |||||||||||||||||| |
|
|
| T |
5306565 |
caagctttaattgctttttgatatcttcttttatccattggcttgccaaagagtatattttcttgaactgttccactttgtatcca |
5306480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 247
Target Start/End: Complemental strand, 11833434 - 11833226
Alignment:
| Q |
39 |
attgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaattgaattctttgctttt |
138 |
Q |
| |
|
||||| || ||||| ||||| |||||||| ||||| |||||||| ||||| | ||| |||||||| |||||||||||||| | |||||| |||||||||| |
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|
| T |
11833434 |
attgctgctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatctgcatcattatagactgctctagctagttgaatcctttgctttt |
11833335 |
T |
|
| Q |
139 |
gccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagcacatgcttttattgcatt |
238 |
Q |
| |
|
| |||||||| | || | |||||||| || ||||||||||||||||||||||||||| ||| |||||||| | || | ||| ||||| ||||| || |
|
|
| T |
11833334 |
gtcctccacttatattgatccctctctgaccaatttctgtaagatcaccatggctaaaatcattgatatccttatgtaaggaacaagctttaattgcttt |
11833235 |
T |
|
| Q |
239 |
ctcatatct |
247 |
Q |
| |
|
||||||||| |
|
|
| T |
11833234 |
ctcatatct |
11833226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 310
Target Start/End: Original strand, 31526355 - 31526629
Alignment:
| Q |
36 |
agaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagccaattgaattctttgct |
135 |
Q |
| |
|
||||| |||||||| || || || ||||| || |||||||||||||| ||||| | ||||||||| ||||| ||||||| ||| | |||||| ||||||| |
|
|
| T |
31526355 |
agaatagcagcagtgtgcgcgtcaactgcgctgaaagggtcatcaaggagatagatatcagcatcgttgtaaactgctcgagctagttgaatcctttgct |
31526454 |
T |
|
| Q |
136 |
tttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatggctaaaaccatctatatccttgtccaaagcacatgcttttattgc |
235 |
Q |
| |
|
|||| |||||||| | ||||| ||||| || ||||||||||||||||||||||| || ||| ||| ||||| | |||||| ||||| ||||| || || |
|
|
| T |
31526455 |
tttgtcctccacttaggttaatccctctttgacctatttctgtaagatcaccatgactcaaatcattgatatcttcgtccaaggcacaagctttaatagc |
31526554 |
T |
|
| Q |
236 |
attctcatatctgttcctt-tccattaattttccaaagagtatgttatcacgaattgttccactttgtatccatga |
310 |
Q |
| |
|
|||||||||||| | | || | |||| || ||||||||||| ||||| |||| |||||||||||||||||||| |
|
|
| T |
31526555 |
attctcatatct-tgctttgttcattggcttgccaaagagtatattatctcgaacggttccactttgtatccatga |
31526629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 11738952 - 11739020
Alignment:
| Q |
122 |
ttgaattctttgcttttgccctccactcaagttaagtcctctctgtcctatttctgtaagatcaccatg |
190 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||||| |||||||| ||| ||||| || ||||||||||| |
|
|
| T |
11738952 |
ttgaattcgttgcttttgacccccactcaagttaactcctctctctccaatttcagtgagatcaccatg |
11739020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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