View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_3 (Length: 691)
Name: NF7987_low_3
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 553; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 18 - 673
Target Start/End: Original strand, 37302532 - 37303185
Alignment:
| Q |
18 |
atgacgataaataacatgttcatagaagaaatcggactagaagcagtgtatttaaaaaattcgaggatgaaaactcgtaattttttagagagagactaga |
117 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37302532 |
atgacgataaatgacatgttcatagaagaaatcggactagaagcaatgtatttaagaaattcgaggatgaaaactcgtaattttttagagagagactaga |
37302631 |
T |
|
| Q |
118 |
cttggaatcgagttttaagaattttttgggattnnnnnnntgtttaaacaaaatgacaaagagatgtgtttttgtattgataccgccaacatcgaccgtg |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37302632 |
cttggaatcgagttttaagaattttttgggatgaaaaaaatgtttaaacaaaatgacaaagagctgtgtttttgtattgataccgccaacatcgaccgtg |
37302731 |
T |
|
| Q |
218 |
ggaatgtttgttgccatggcactagcaagtctttcacattgtcgatctagggttgcaatccaacgttttgcaccaaatgcatgtccagaactaacaagct |
317 |
Q |
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| T |
37302732 |
ggaatgtttgttgccatggcactagcaagtctttcacattgtcgatctagggttgcaatccaacgttttgcaccaaatgcatgtccagaactaacaagct |
37302831 |
T |
|
| Q |
318 |
gcttgtatagattatgaacacctctatcatccacttcaacatgctcaacccatataacctaggnnnnnnnnttaacttatagttaagctacgtagagnnn |
417 |
Q |
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| T |
37302832 |
gcttgtatagattatgaacacctctatcatccacttcaacatgctcaacccatataacctaggaaaaaaaattaacttatagttaagctacgtagagaaa |
37302931 |
T |
|
| Q |
418 |
nnnnnntcaaattgcaaatgtaaacacaatcttaattttgtactcaaaaaatattgtgacaaaaataacctttgagtagccattgggcatttcttgaatt |
517 |
Q |
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| T |
37302932 |
aaaaaatcaaattgcaaatgtaaacacaatcttaattttgtactcaaaa--tattgtgacaaaaataacctttgagtagccattgggcatttcttgaatt |
37303029 |
T |
|
| Q |
518 |
aagcaaccagaaggccttcttcttgatctggcagaaggactagggcgtaaattgtccaaagaaacatccactactgcccaagttccatcagcatgttgct |
617 |
Q |
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| T |
37303030 |
aagcaaccagaaggccttcttcttgatctggcagaaggactagggcgtaaattgtccaaagaaacatccactactgcccaagttccatcagcatgttgct |
37303129 |
T |
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| Q |
618 |
tacaataccttacaaaataactctctctagttggcacaagtggtgaaggtacttgc |
673 |
Q |
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| T |
37303130 |
tacaataccttacaaaataactctctctagttggcacaagtggtgaaggtacttgc |
37303185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 37302321 - 37302423
Alignment:
| Q |
48 |
atcggactagaagcagtgtatttaaaaaattcgaggatgaaaactcgtaattttttagagagagactagacttggaatcg-agttttaagaattttttgg |
146 |
Q |
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| T |
37302321 |
atcggactagaaacaaagtatttataaaatttgaggatgaacattcgtaattttctagagttagactaaaattggaatcgaatttttaagaattttttgg |
37302420 |
T |
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| Q |
147 |
gat |
149 |
Q |
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||| |
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| T |
37302421 |
gat |
37302423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 198 - 370
Target Start/End: Complemental strand, 16828027 - 16827855
Alignment:
| Q |
198 |
taccgccaacatcgaccgtgggaatgtttgttgccatggcactagcaagtctttcacattgtcgatctagggttgcaatccaacgttttgcaccaaatgc |
297 |
Q |
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|||| |||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| |
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| T |
16828027 |
tacccccaacatcaacggtgggaatgtttgttgccatggagctagcaagtctttcacattgtcgatctaaagtcgcaacccaacgttttgcaccaaatgc |
16827928 |
T |
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| Q |
298 |
atgtccagaactaacaagctgcttgtatagattatgaacacctctatcatccacttcaacatgctcaacccat |
370 |
Q |
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| T |
16827927 |
atctccagtgttaacaagttgcttgtatagattatgaacacccctctcatccacttctacatgctcaacccat |
16827855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 485 - 672
Target Start/End: Complemental strand, 16827305 - 16827118
Alignment:
| Q |
485 |
acctttgagtagccattgggcatttcttgaattaagcaaccagaaggccttcttcttgatctggcagaaggactagggcgtaaattgtccaaagaaacat |
584 |
Q |
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||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| | |||||||| ||||| | ||| |||||||| |||| |
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| T |
16827305 |
acctttgagtaaccatttggcatctcttgaattaagcaaccagaaggccttcttctacatctagatgaaggactcgggcgcagattatccaaagacacat |
16827206 |
T |
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| Q |
585 |
ccactactgcccaagttccatcagcatgttgcttacaataccttacaaaataactctctctagttggcacaagtggtgaaggtacttg |
672 |
Q |
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|||| |||||||| || || |||| |||||| ||||||||||||||||| |||||||| | ||| |||||||| |||||||||||||| |
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| T |
16827205 |
ccacaactgcccatgtcccgtcaggatgttgtttacaataccttacaaagtaactctcacgagtcggcacaaggggtgaaggtacttg |
16827118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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