View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_31 (Length: 321)
Name: NF7987_low_31
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 42373461 - 42373753
Alignment:
| Q |
17 |
acgtatgagttagggttttgcatagcataacgaacaccagcttgtgccgcgagatgcatcacgtgagtaaacggaaccacatcgaaaagcttcttgagaa |
116 |
Q |
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| T |
42373461 |
acgtatgagttagggttttgcatagcatagcgaacaccagcttgtgccgcgagatgcatcacgtgagtaaacggaaccacatcgaaaagcttcttgagaa |
42373560 |
T |
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| Q |
117 |
gcgcaccgtcgttgatatcaccttccacgacgaaaattccggcgcgttctagaagcttctgacgggcgtgttttaggttaacatcatagtaccgattgaa |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42373561 |
gcgtaccgtcgttgatatcaccttccacgacgaaaattccggcgcgttctagaagcttctgacgggcgtgttttaggttaacatcatagtaccgattgaa |
42373660 |
T |
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| Q |
217 |
attatcaatcccaagaacaccgtcgccgcggcgttttaaagcgagtgcgacatgacttccgacgaaaccagcggatccggtgacgagaacgat |
309 |
Q |
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| T |
42373661 |
attatcaatcccaagaacaccgtcgccgcggcgttttaaagcgagtgcgacatgacttccgacgaaaccagcggatccggtgacgagaacgat |
42373753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 42179339 - 42179415
Alignment:
| Q |
17 |
acgtatgagttagggttttgcatagcataacgaacaccagcttgtgccgcgagatgcatcacgtgagtaaacggaac |
93 |
Q |
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| T |
42179339 |
acgtatgagctagggttttgcatagcataacgaacaccagcttgtgccgcaagatgcatcacgtgcgtaaacggaac |
42179415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 54114403 - 54114345
Alignment:
| Q |
50 |
acaccagcttgtgccgcgagatgcatcacgtgagtaaacggaaccacatcgaaaagctt |
108 |
Q |
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| T |
54114403 |
acaccagcttgagctgcgagatgcatcacatgagtaaaagccacaacatcgaaaagctt |
54114345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 287
Target Start/End: Original strand, 3520901 - 3521162
Alignment:
| Q |
26 |
ttagggttttgcatagcataacgaacaccagcttgtgccgcgagatgcatcacgtgagtaaacggaaccacatcgaaaagcttcttgagaagcgcaccgt |
125 |
Q |
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| T |
3520901 |
ttagggtttcgcatagcataacgaaccccagcttgagcagcaagatgcataacatgcgtaaaagcaacaacatcaaacagtttacggagaagatgaacat |
3521000 |
T |
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| Q |
126 |
cgttgatatcaccttccacgacgaaaattccggcgcgttctagaagcttctgacgggcgtgttttaggttaacatcatagtaccgattgaaattatcaat |
225 |
Q |
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| T |
3521001 |
cattgatatcaccttcaacgacaaaaacaccagcgcgtgaaagaaccttggcacgagtgcgtttgaggttaatatcataataccgattgaaattatcaat |
3521100 |
T |
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| Q |
226 |
cccaagaacaccgtcgccgcggcgttttaaagcgagtgcgacatgacttccgacgaaaccag |
287 |
Q |
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||| | ||| || ||||| || || || | |||||| | |||||| | ||||||||||||| |
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| T |
3521101 |
ccctaaaaccccatcgccacgtcgcttaagagcgagcgagacatgcataccgacgaaaccag |
3521162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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