View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7987_low_32 (Length: 319)
Name: NF7987_low_32
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 34 - 302
Target Start/End: Complemental strand, 39661986 - 39661718
Alignment:
| Q |
34 |
atgtgttttgttatcttctgtggcctctaactgctgttctcatgtaggatgcctgagtatattatatgcatttagatttttgatgattgtgaacatgacc |
133 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39661986 |
atgtgttttgttttcttctgtggcctctaactgctgttctcatgtaggatgcctgagtatattatatgcatttagatttttgatgattgtgaacatgacc |
39661887 |
T |
|
| Q |
134 |
atatatttgcctcttgatgccaaacagttgtcttcactttccgtgctaatgaatcggagttcaagaaaagctgtatcacgtcccatctcagcaaagacat |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39661886 |
atatatttgcctcttgatgccaaacagttgtcttcactttccgtgctaatgaatcggagttcaagaaaagctgtatcacgtcccctctcagcaaagacat |
39661787 |
T |
|
| Q |
234 |
taaggtcagatgtgtcgcgcctgctttcaaaaactctcacacatcaaaatcagaccttaatgaagaatt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39661786 |
taaggtcagatgtgtcgcgcctgctttcaaaaactctcgcacatcaaaatcagaccttaatgaagaatt |
39661718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 125 - 302
Target Start/End: Complemental strand, 39657309 - 39657133
Alignment:
| Q |
125 |
aacatgaccatatatttgcctcttgatgccaaacagttgtcttcactttccgtgctaatgaatcggagttcaagaaaagctgtatcacgtcccatctcag |
224 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| | |||||||| |||||| |
|
|
| T |
39657309 |
aacataaccatat-tttgcctcttgatgccaaacagttgtcttcactttctgtgctaatgaatcggagatcaagaaaatctgcaccacgtcccctctcag |
39657211 |
T |
|
| Q |
225 |
caaagacattaaggtcagatgtgtcgcgcctgctttcaaaaactctcacacatcaaaatcagaccttaatgaagaatt |
302 |
Q |
| |
|
||| || || |||| ||| ||||||| ||||||||||||||||| |||| ||||||||||| |||| |||||||||| |
|
|
| T |
39657210 |
caaggagatcaaggacagctgtgtcgggcctgctttcaaaaactggcacatatcaaaatcaggcctttatgaagaatt |
39657133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 39652359 - 39652319
Alignment:
| Q |
159 |
agttgtcttcactttccgtgctaatgaatcggagttcaaga |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39652359 |
agttgtcttcactttccgtgctaatgaatcggagatcaaga |
39652319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 39657471 - 39657421
Alignment:
| Q |
39 |
ttttgttatcttctgtggcctctaactgctgttctcatgtaggatgcctga |
89 |
Q |
| |
|
||||||| || ||| || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
39657471 |
ttttgttttcctctctgccctctaactgctgttctcatgcaggatgcctga |
39657421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University