View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_33 (Length: 313)
Name: NF7987_low_33
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 5116947 - 5117232
Alignment:
| Q |
1 |
tggtgttaacctgtgaatatcaaataccacaaaacgaaataattataattgacatactacaaataagcatggtatacatgtaatnnnnnnntcaaacata |
100 |
Q |
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| T |
5116947 |
tggtgttaacctgtgaatatcaaataccacaaaacgaagtaattataattgacatactacaaataagcatggtatacatgtaataaaaaa-tcaaacata |
5117045 |
T |
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| Q |
101 |
aaatgaatttaagcaatcatttaaaaagaataaacagttgtgacattttagttcccttcgtgatgtagatgaactaatcctaaaaagttggatttgtaag |
200 |
Q |
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| T |
5117046 |
aaatgaatttaagcaatcatttaaaaagaataaacagttgtgacattttagttcccttcgtgatgtagatgaactaatcctaaaaagttggatttgtaag |
5117145 |
T |
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| Q |
201 |
tctcaaataatttattataactggtgaatccaatgttagtaaaagttttaaggatagtcctcgtgagtttagctcaggtggtaagga |
287 |
Q |
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| T |
5117146 |
tcccaaataatatattataactgttgaatccaatgttagtaaaagttttaaggatagttctcgtgagcttagctcagttgataagga |
5117232 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 40693678 - 40693710
Alignment:
| Q |
255 |
tagtcctcgtgagtttagctcaggtggtaagga |
287 |
Q |
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| T |
40693678 |
tagtcctcgtgagtttagctcagttggtaagga |
40693710 |
T |
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