View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_34 (Length: 310)
Name: NF7987_low_34
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 9935172 - 9935448
Alignment:
| Q |
16 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcaga |
115 |
Q |
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| T |
9935172 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcaga |
9935271 |
T |
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| Q |
116 |
agctgaaatttcctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgt |
215 |
Q |
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| T |
9935272 |
agctgaaatttcctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgt |
9935371 |
T |
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| Q |
216 |
tactactggtgttggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggttaactt |
292 |
Q |
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| T |
9935372 |
tactactggtgttggacaacatcaaatgtgggctgctcaattctacaaatacaagagacctaggcagtggttaactt |
9935448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 3472799 - 3472867
Alignment:
| Q |
219 |
tactggtgttggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggtt |
287 |
Q |
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| T |
3472799 |
tactggtgttggacaacatcagatgtgggctgctcagttttataggtacaagagaccaaggcagtggtt |
3472867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 45477118 - 45477394
Alignment:
| Q |
16 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcaga |
115 |
Q |
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| T |
45477118 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaagcttgattttgaggcatggaggcaggagttgaatgtgcaga |
45477217 |
T |
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| Q |
116 |
agctgaaatttcctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgt |
215 |
Q |
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|| | ||||||||||||| |||||||| ||||||| |||| ||||||||||| ||||| ||| || ||||||| ||||| || |||||||| |||||||| |
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| T |
45477218 |
agttaaaatttcctcttggttttaagacatttgaggatgctatttcgcctcagtatgctattcaggtgcttgatgagttgacgaatggtgacgctattgt |
45477317 |
T |
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| Q |
216 |
tactactggtgttggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggttaactt |
292 |
Q |
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|| ||||||||||||||| |||||||||||| ||||||| |||||||| || ||||||||||||||||||||||||| |
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| T |
45477318 |
tagtactggtgttggacagcatcaaatgtggtctgctcagttttacaagtataagagacctaggcagtggttaactt |
45477394 |
T |
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