View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7987_low_35 (Length: 303)
Name: NF7987_low_35
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 55382849 - 55382564
Alignment:
| Q |
1 |
aaacctgtttacacccctcacctcaagtatgtatgcatagcaggaaggtaacacctacactctttcaaggaaacatacatccctcaaaagtagtcttttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
55382849 |
aaacctgtttacacccctcacctcaagtatgtatgcatagcaggaaggtaacacccacactctttcaaggaaacttacatccctcaaaagtagtcttttt |
55382750 |
T |
|
| Q |
101 |
tgatactcaacttctacaatttataaaatgcagaccatgccaacacaaacataacttactatacaatcaattattcatttcatttcttactacaaaatga |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55382749 |
tgatactcaatttctacaatttataaaatgcagaccatgccaacacaaacataacttactatacaatcaattattcatttcatttcttactacaaaatga |
55382650 |
T |
|
| Q |
201 |
aggtatattcaaggggctcccctttttggaaactcaaatccaaatgctgagcctgcacttcctacagatacttctcagctacttcc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
55382649 |
aggtatattcaaggggctcccctttttggaaactcaaatccaaatgctgagcctgcacttcctacagatacttctcatctacttcc |
55382564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University