View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_36 (Length: 298)
Name: NF7987_low_36
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 7090647 - 7090468
Alignment:
| Q |
1 |
tcacatgacaacccatgctaaattattgtgttatgatatggtctgaaatataacacataaaatattattttt-aaatcataaaccaaattgattcttgct |
99 |
Q |
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| T |
7090647 |
tcacatgacaacccatgctaaattattgtgttatgatatggtctgaaatataacacataaaatattattttttaaatcataaaccaaattgattcttgct |
7090548 |
T |
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| Q |
100 |
accagaccagatattccttttctatagatagaagggcaaccccaaaaataaactatataaaattttgcatagtatattaa |
179 |
Q |
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| T |
7090547 |
accagaccagatattccttttctatagatagaagggcaaccccaaaaataaactatataaaattttgcatagtatattaa |
7090468 |
T |
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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 7090481 - 7090404
Alignment:
| Q |
198 |
gcatagtatattaatttgttcatagtatatatgtcctattttttccaacttaaattaggcaccgttaatgccaccaca |
275 |
Q |
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| T |
7090481 |
gcatagtatattaattttttcatagtatatatgtcctattttttccaacttaaaataggcaccgttaatgccaccaca |
7090404 |
T |
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