View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_37 (Length: 282)
Name: NF7987_low_37
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_37 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0438 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 1186569 - 1186295
Alignment:
| Q |
8 |
gtgagatgaaaagaaacaggagggaaggtgtttaacagcggtgtaaaggatttgaaagtattgaacgttgtgtgaaaatgcttattctatagtctttagg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || |||||||||||||||||| |
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| T |
1186569 |
gtgagatgaaaagaaacaggagggaaggtgtttaacagcggtgtaaaggatttgaaagtgttgaacgttgtgcgaaaaggcgtattctatagtctttagg |
1186470 |
T |
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| Q |
108 |
tataggtcacgactgagcacatgagtccatcggaagtggaaaacgagagaatggatatcagttgagtgatcacgaagagacaacaacatagatatgaact |
207 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1186469 |
tataggtcacgactgagcacatgagtccattggaagtggaaaacgagagaatggatatcagttgagtgatcacgaagagacaacaacatagatatgaact |
1186370 |
T |
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| Q |
208 |
gttcaaaactttcttccgtactaaaatgatcaacacttaatgtaagagtggaaagagtcttccaaagattgatcc |
282 |
Q |
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| T |
1186369 |
gttcaaaactttcttccgtactaaaatgatcaacacttaatgtaagagtggaaagagtcttccagagattgatcc |
1186295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 1204633 - 1204359
Alignment:
| Q |
8 |
gtgagatgaaaagaaacaggagggaaggtgtttaacagcggtgtaaaggatttgaaagtattgaacgttgtgtgaaaatgcttattctatagtctttagg |
107 |
Q |
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| T |
1204633 |
gtgagatgaaaagaaacaggagggaaggtgtttaacagcggtgtaaaggatttgaaagtgttgaacgttgtgcgaaaaggcgtattctatagtctttagg |
1204534 |
T |
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| Q |
108 |
tataggtcacgactgagcacatgagtccatcggaagtggaaaacgagagaatggatatcagttgagtgatcacgaagagacaacaacatagatatgaact |
207 |
Q |
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| T |
1204533 |
tataggtcacgactgagcacatgagtccattggaagtggaaaacgagagaatggatatcagttgagtgatcacgaagagacaacaacatagatatgaact |
1204434 |
T |
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| Q |
208 |
gttcaaaactttcttccgtactaaaatgatcaacacttaatgtaagagtggaaagagtcttccaaagattgatcc |
282 |
Q |
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| T |
1204433 |
gttcaaaactttcttccgtactaaaatgatcaacacttaatgtaagagtggaaagagtcttccagagattgatcc |
1204359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 1304457 - 1304731
Alignment:
| Q |
8 |
gtgagatgaaaagaaacaggagggaaggtgtttaacagcggtgtaaaggatttgaaagtattgaacgttgtgtgaaaatgcttattctatagtctttagg |
107 |
Q |
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| T |
1304457 |
gtgagatgaaaagaaacaggagggaaggtgtttaacagcggtgtaaaggatttgaaagtgttgaacgttgtgcgaaaaggcgtattctatagtctttagg |
1304556 |
T |
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| Q |
108 |
tataggtcacgactgagcacatgagtccatcggaagtggaaaacgagagaatggatatcagttgagtgatcacgaagagacaacaacatagatatgaact |
207 |
Q |
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| T |
1304557 |
tataggtcacgactgagcacatgagtccattggaagtggaaaacgagagaatggatatcagttgagtgatcacgaagagacaacaacatagatatgaact |
1304656 |
T |
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| Q |
208 |
gttcaaaactttcttccgtactaaaatgatcaacacttaatgtaagagtggaaagagtcttccaaagattgatcc |
282 |
Q |
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| T |
1304657 |
gttcaaaactttcttccgtactaaaatgatcaacacttaatgtaagagtggaaagagtcttccagagattgatcc |
1304731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 5418 - 5381
Alignment:
| Q |
245 |
taatgtaagagtggaaagagtcttccaaagattgatcc |
282 |
Q |
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| T |
5418 |
taatgtaagagtgggaagagtcttccagagattgatcc |
5381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 43875203 - 43875240
Alignment:
| Q |
245 |
taatgtaagagtggaaagagtcttccaaagattgatcc |
282 |
Q |
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| T |
43875203 |
taatgtaagagtgggaagactcttccaaagattgatcc |
43875240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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