View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_39 (Length: 279)
Name: NF7987_low_39
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_39 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 28607784 - 28608046
Alignment:
| Q |
1 |
ctcatacataacagatattcttggtacacatgacgttgttggtgcatttgtatacgggttgattttacctcatggtaaatttgctgacatggtcacatca |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28607784 |
ctcatacataactgatattcttggtacacatgacgttgttggtgcatttgtatacgggttgattttacctcacggtaaatttgctgacatggtcacatca |
28607883 |
T |
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| Q |
101 |
atgactaatgattttggtggtgggtttctagcaccaatttactttattggaagtggattgaaactcatgttcgtgcccgttttctatcaaccaagttggc |
200 |
Q |
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| T |
28607884 |
atgactaatgattttggtggtgggtttctagcaccaatttactttattggcagtggattgaaactcatgttcgtgcccgttttctatcaaccaagttggc |
28607983 |
T |
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| Q |
201 |
cctttacacttatcattatactcttgatgtgtgttctaaagattctaagcactttgttttcca |
263 |
Q |
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| T |
28607984 |
cctttacacttatcattatactcttgatgtgtgttctaaagattctaagcactttgttttcca |
28608046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 7589792 - 7589668
Alignment:
| Q |
6 |
acataacagatattcttggtacacatgacgttgttggtgcatttgtatacgggttgattttacctcatggtaaatttgctgacatggtcacatcaatgac |
105 |
Q |
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| T |
7589792 |
acataacatatattctcggcacacctaacattgttggtgcttcaatgtaccggttgattttaccacacagtaa-tttgctgacatggtcacgtcaacgac |
7589694 |
T |
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| Q |
106 |
taatgattttggtggtgggtttctag |
131 |
Q |
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| T |
7589693 |
caatgattttggtggtgtgtttctag |
7589668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 439119 - 438861
Alignment:
| Q |
1 |
ctcatacataacagatattcttggtacacatgacgttgttggtgcatttgtatacgggttgattttacctcatggtaaatttgctgacatggtcacatca |
100 |
Q |
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||||| |||| | |||| |||||| |||||||| |||||||| || ||| |||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
439119 |
ctcattcatagccgatactcttggcacacatgatgttgttggggcttttttatacgggttgattttacctcacggtaaatttgctgacatggtcgtgtca |
439020 |
T |
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| Q |
101 |
atgactaatgattttggtggtgggtttctagcaccaatttactttattggaagtggattgaaactcatgttcgtgcccgttttctatcaaccaagttggc |
200 |
Q |
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| T |
439019 |
atgactaatgattttggtattggctttcttgcaccgatctacttttgtggcaatggatcaaaactcatggtgaaaaccattttctttcagccaaattgtg |
438920 |
T |
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| Q |
201 |
cctttacacttatcattatactcttgatgtgtgttctaaagattctaagcactttgttt |
259 |
Q |
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||| |||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |
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| T |
438919 |
cctatacacttatcattatactcttgttgtgtgttccaaagattttaagcactttgttt |
438861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 13659159 - 13659293
Alignment:
| Q |
1 |
ctcatacataacagatattcttggtacacatgacgttgttggtgcatttgtatacgggttgattttacctcatggtaaatttgctgacatggtcacatca |
100 |
Q |
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||||| |||||||||||||||||| ||||| ||| ||||||| || ||||| |||||||||||||||||||| |||||||||||||| || ||||| || |
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| T |
13659159 |
ctcatgcataacagatattcttggaacacaagacattgttggggcttttgtgtacgggttgattttacctcacggtaaatttgctgatatcgtcactaca |
13659258 |
T |
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| Q |
101 |
atgactaatgattttggtggtgggtttctagcacc |
135 |
Q |
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| T |
13659259 |
ctgactgatgatttttgcggcgggtttctagcacc |
13659293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 13651673 - 13651801
Alignment:
| Q |
1 |
ctcatacataacagatattcttggtacacatgacgttgttggtgcatttgtatacgggttgattttacctcatggtaaatttgctgacatggtcacatca |
100 |
Q |
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|||||| ||||||| ||||||||| ||||| || |||| || || ||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| |
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| T |
13651673 |
ctcatatataacaggtattcttggcacacaagatattgtcggagcttttgtgtacgggttgattttgcctcatggtaaatttgctgatatggtcacgtca |
13651772 |
T |
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| Q |
101 |
atgactaatgattttggtggtgggtttct |
129 |
Q |
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| T |
13651773 |
atgactgatgactttggtggcgagtttct |
13651801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 13659349 - 13659417
Alignment:
| Q |
191 |
ccaagttggccctttacacttatcattatactcttgatgtgtgttctaaagattctaagcactttgttt |
259 |
Q |
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|||| ||||||||| |||||| | |||||| ||||| | ||||||| |||||| |||||||||||||| |
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| T |
13659349 |
ccaacttggcccttaacacttgttattataatcttgttatgtgttccgaagattttaagcactttgttt |
13659417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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