View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_4 (Length: 678)
Name: NF7987_low_4
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 26 - 671
Target Start/End: Complemental strand, 2795220 - 2794575
Alignment:
| Q |
26 |
gcagacgattagataaattgccaacaatctcagttacaagagctttcataggcgcaacataaacaattttataagcactatggtcaattgaaccatcacc |
125 |
Q |
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| T |
2795220 |
gcagacgattagataaattgccaacaatctcagttacaagagctttcataggcgcaacataaacaattttataagcactatggtcaattgaaccatcacc |
2795121 |
T |
|
| Q |
126 |
aggatttctatgccgtgcaatctcttgaagtatggtaagaacagcaacattggtttttccagcaccagttgtagcacaaagtaaaagattatccgattta |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2795120 |
aggatttctatgccgtgcaatctcttgaagtatggtaagaacagcaacattggtttttccagcaccagttggagcacaaagtaaaagattatccgattta |
2795021 |
T |
|
| Q |
226 |
aacagagcagtctcgtataccttgctctgcactctattcaattgtatcattcctttgaaggctggttgtgcccaatccggcatataaccaatattcacaa |
325 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795020 |
aacagagcagtctcatataccttgctctgcactctattcaattgtatcattcctttgaaggctggttgtgcccaatccggcatataaccaatattcacaa |
2794921 |
T |
|
| Q |
326 |
gtttctcattaggatcaatgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcggaagcctgtaagacccatcaggaagatcaca |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794920 |
gtttctcattaggatcaatgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcggaagcctgtaagacccatcaggaagatcaca |
2794821 |
T |
|
| Q |
426 |
ttttccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaagtatccggcattgacccccattttccccaactccatcaccagtt |
525 |
Q |
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| T |
2794820 |
ttttccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaagcatccggcgttgacccccattttccccaactccatcaccagtt |
2794721 |
T |
|
| Q |
526 |
cccctatcaatgtccatgtccccgtctttcaaccttcgagcctcgtaccttatactcttctccaagttcttctccctctctatagtagaggctttcacaa |
625 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2794720 |
cccctatcaatgtccatgtccccgtctttcaaccttcgagcctcgtaccttatactcttctccaagttcttctccctctctatagtagaggctttcacag |
2794621 |
T |
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| Q |
626 |
catataactcctccaaaattgactccaaattcgaccccttcatctc |
671 |
Q |
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| T |
2794620 |
catataactcctccaaaattgactccaaattcgaccccttcatctc |
2794575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 3e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 31 - 482
Target Start/End: Complemental strand, 29262728 - 29262277
Alignment:
| Q |
31 |
cgattagataaattgccaacaatctcagttacaagagctttcataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggat |
130 |
Q |
| |
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|||||||| ||||| ||||||| ||| | |||||||||||||| || |||||||| ||||||||||| ||||| |||||||| ||||||||| | | || |
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| T |
29262728 |
cgattagacaaattcccaacaacctccgccacaagagctttcattggtgcaacatatacaattttatatgcactgtggtcaatagaaccatcatcggtat |
29262629 |
T |
|
| Q |
131 |
ttctatgccgtgcaatctcttgaagtatggtaagaacagcaacattggtttttccagcaccagttgtagcacaaagtaaaagattatccgatttaaacag |
230 |
Q |
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| |||||||| ||||||| |||||| || ||||||||||||||||| |||||||||||||| || | |||||||| || | |||||| | ||| || || |
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| T |
29262628 |
tcctatgccgcgcaatctgttgaaggatagtaagaacagcaacattcgtttttccagcaccggtaggggcacaaagcaacaaattatcaggtttgaagag |
29262529 |
T |
|
| Q |
231 |
agcagtctcgtataccttgctctgcactctattcaattgtatcattcctttgaaggctggttgtgcccaatccggcatataaccaatattcacaagtttc |
330 |
Q |
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|||||| || || ||||||||||| ||||||||||| ||| ||||||||||||| || |||||||||||||| ||||| ||| |||| ||| ||| |
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| T |
29262528 |
agcagtttcataaaccttgctctgaactctattcaactgtgtcattcctttgaaagccggttgtgcccaatcaggcatggcggaaatcttcaaaagcttc |
29262429 |
T |
|
| Q |
331 |
tcattaggatcaatgggtttagccttcaaggcaggcacatgaatttcttgataaccttttctcg-gaagcctgtaagacccatcaggaagatcacatttt |
429 |
Q |
| |
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||||||||||||| ||||||||||||||| || || |||||||| |||| |||||||||| ||| || |||| ||||||||||||||||| ||||||||| |
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| T |
29262428 |
tcattaggatcaaggggtttagccttcaatgctggaacatgaatctcttcataacctttt-tcgagatgcctataagacccatcaggaaggtcacatttt |
29262330 |
T |
|
| Q |
430 |
ccctttgtcataaacaaaccaccttgttcaaaagcaaggttatccaaatcaag |
482 |
Q |
| |
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||||| |||||| || |||||||||||||||| |||||||| |||||||| |
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| T |
29262329 |
ttctttgccataaataacccaccttgttcaaaagtgaggttatctaaatcaag |
29262277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 29189686 - 29189747
Alignment:
| Q |
247 |
ttgctctgcactctattcaattgtatcattcctttgaaggctggttgtgcccaatccggcat |
308 |
Q |
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||||||||||||||||||| || ||||||||||||| ||||||||||||||||| ||||| |
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| T |
29189686 |
ttgctctgcactctattcaggtgagtcattcctttgaaagctggttgtgcccaatcaggcat |
29189747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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