View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_47 (Length: 251)
Name: NF7987_low_47
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_47 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 28607805 - 28607587
Alignment:
| Q |
14 |
aagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctctttctgtcttgcgattaatgact |
113 |
Q |
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| T |
28607805 |
aagaatatcagttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctctttctgtcttgcgattaatgact |
28607706 |
T |
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| Q |
114 |
tttgcaattataggatgcaccacaaagatgcaaatgaaaacaaatattacagtgcttaacactggatatattgcacttgtaccattaactgaaaatggaa |
213 |
Q |
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| T |
28607705 |
tttgcgattataggatgcaccacaaagatgcaaatgaaaacaaatattacagtgcttaacactggatatattgcacttgtaccattaactgaaaatggaa |
28607606 |
T |
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| Q |
214 |
caaataatatgaataaaat |
232 |
Q |
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| T |
28607605 |
caaataatatgaataaaat |
28607587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 7589803 - 7589922
Alignment:
| Q |
41 |
aaaaagtcccatcaccacaaagactaattggttaccatcccattcatctctttctgtcttgcgattaatgacttttgcaattataggatgcaccacaaag |
140 |
Q |
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| T |
7589803 |
aaaaattcccatgaccacaaagagatattggttatcattccattaatctctttttgtcttgcgatcaatggccttgacaatgatacaatataccacaaag |
7589902 |
T |
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| Q |
141 |
atgcaaatgaaaacaaatat |
160 |
Q |
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| T |
7589903 |
atgcaaattaaaataaatat |
7589922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 439110 - 439316
Alignment:
| Q |
26 |
tatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctctttctgtcttgcgattaatgacttttgcaattata |
125 |
Q |
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| T |
439110 |
tatgaatgagaaaaccataaggcccataaagacaaaaactagttggttagcatcccattcatctctttctgtcttgcgatcaatgacctttacaatgata |
439209 |
T |
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| Q |
126 |
ggatgcaccacaaagatgcaaatgaaaacaaatattacagtgcttaacactggatatattgcacttgtaccattaactgaaaatggaacaaataatatga |
225 |
Q |
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| T |
439210 |
ggatgcaccacaaagatggaaatgaatataaatattgcagtgcttaacgtcgtgtatattgcctctgtaccattaactgaaaatggaacaaataatacga |
439309 |
T |
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| Q |
226 |
ataaaat |
232 |
Q |
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| T |
439310 |
ataaaat |
439316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 13659180 - 13658981
Alignment:
| Q |
14 |
aagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctctttctgtcttgcgattaatgact |
113 |
Q |
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|||||||||||||||| ||||| ||||||||| |||||||| | ||||| ||||| ||| | | ||||||||||||||| |||||||||| ||||| |
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| T |
13659180 |
aagaatatctgttatgcatgagcaaacaaaaatccccatcacaagaaagagtaattctttatcgttccattcatctctttcagtcttgcgatcaatgaac |
13659081 |
T |
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| Q |
114 |
tttgcaattataggatgcaccacaaagatgcaaatgaaaacaaatattacagtgcttaacactggatatattgcacttgtaccattaactgaaaatggaa |
213 |
Q |
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| T |
13659080 |
tttacaatgatcggacgcaccagaaaaatgcaaatgaaaacaaatatgacggtgcttaacactgagtatattgcccctacaccattaattgagaatggaa |
13658981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 13651694 - 13651521
Alignment:
| Q |
14 |
aagaatatctgttatgtatgagaaaacaaaaagtcccatcaccacaaagactaattggttaccatcccattcatctctttctgtcttgcgattaatgact |
113 |
Q |
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| T |
13651694 |
aagaatacctgttatatatgagcaaacaaacatccccatcagaagaaagagtaattgtttatcatcccattcatctctttcaagcttgcgatcaatgacc |
13651595 |
T |
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| Q |
114 |
tttgcaattataggatgcaccacaaagatgcaaatgaaaacaaatattacagtgcttaacactggatatattgc |
187 |
Q |
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| T |
13651594 |
tttacgatgataggacgcaccacaaaaatgcaaatgaaaacaaatacgacggtacttaacactgagtatattgc |
13651521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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