View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7987_low_48 (Length: 249)

Name: NF7987_low_48
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7987_low_48
NF7987_low_48
[»] chr3 (13 HSPs)
chr3 (1-249)||(2748875-2749123)
chr3 (1-249)||(2807147-2807395)
chr3 (1-205)||(5412810-5413014)
chr3 (1-242)||(2855820-2856064)
chr3 (1-241)||(2759099-2759342)
chr3 (1-166)||(2818520-2818685)
chr3 (1-249)||(2838610-2838864)
chr3 (2-249)||(2768946-2769196)
chr3 (1-249)||(2797238-2797489)
chr3 (5-249)||(2790244-2790491)
chr3 (3-60)||(22648533-22648590)
chr3 (1-45)||(21945673-21945717)
chr3 (2-42)||(22621288-22621328)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-249)||(6162-6413)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 2749123 - 2748875
Alignment:
Q  1 cttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttctttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2749123 cttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttctttt 2749024  T
Q  101 ggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcctatgctaatgctgc 200  Q
    ||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2749023 gggacttcaataccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcatgccattttccattttctctctctcctatgctaatgctgc 2748924  T
Q  201 ttgaagttcctcgttcgtgtgaaatttgaaagttatacctctcacttct 249  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2748923 ttgaagttccttgttcgtgtgaaatttgaaagttatacctctcacttct 2748875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 2807395 - 2807147
Alignment:
Q  1 cttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttctttt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||| |||||||||||| |||||| ||||||| ||    
T  2807395 cttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctctt 2807296  T
Q  101 ggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcctatgctaatgctgc 200  Q
    ||   ||||| ||| |||| |||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||   ||||  ||| ||    
T  2807295 gggaattcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctctagtgctgttgcggc 2807196  T
Q  201 ttgaagttcctcgttcgtgtgaaatttgaaagttatacctctcacttct 249  Q
    |||| | |||| |||| ||||||||||| ||||||||||||||||||||    
T  2807195 ttgatgatccttgttcatgtgaaatttgtaagttatacctctcacttct 2807147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 5413014 - 5412810
Alignment:
Q  1 cttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttctttt 100  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||| || || || || ||| |||||||||||||||||||||||| ||||||||||    
T  5413014 cttggcaagagtggtttttcctaggccccccattcctaccactgatatgactgtacgttccgctgcaccatccaataaccaaccagacaattcttctttt 5412915  T
Q  101 ggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcctatgctaatgctgc 200  Q
    |||||||||||||| |||||||||||||||  ||| || || ||||||||||||||||| |||||| ||||||||||| ||||||   ||||  ||||||    
T  5412914 ggaccttcaattcctacaacttctgtttctgtaatgaatagggaagacagtcgaggatctcgccatcttccattttctgtctctctactgctgttgctgc 5412815  T
Q  201 ttgaa 205  Q
    |||||    
T  5412814 ttgaa 5412810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 2855820 - 2856064
Alignment:
Q  1 cttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttctttt 100  Q
    |||||||||||| ||||||||||  || |||||||| ||||| || |||||  ||||||||| |  ||| ||||||||||||||||||| ||||||||||    
T  2855820 cttggcaagagtagtttttcctataccccccattcccaccactgaaatcactttgcgctcagatataccttccaataaccaaccagacaattcttctttt 2855919  T
Q  101 ggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcctatgctaatgct-- 198  Q
    || |||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |||||||  |||   | ||      
T  2855920 gggccttcaatgcctacaacttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctccactgcggtttcttt 2856019  T
Q  199 -gcttgaagttcctcgttcgtgtgaaatttgaaagttatacctct 242  Q
     |||||| | |||| | ||||||||||||||||||||||||||||    
T  2856020 ggcttgaggatccttgctcgtgtgaaatttgaaagttatacctct 2856064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 2759342 - 2759099
Alignment:
Q  1 cttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttctttt 100  Q
    |||||||||||||||||| || || || |||||||||||||| || ||||| ||||| ||||||  ||| ||||||||||||||| | ||||||||||||    
T  2759342 cttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgaaccctccaataaccaaccatatagttcttctttt 2759243  T
Q  101 ggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcc--ta-tgctaatgc 197  Q
    || ||||||| ||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||| |  || || |  |||    
T  2759242 gggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctcttcggtagtgttgctgc 2759143  T
Q  198 tgcttgaagttcctcgttcgtgtgaaatttgaaagttatacctc 241  Q
    || |||| | |||| |||| | ||||||||||||||||||||||    
T  2759142 tgtttgaggatccttgttcatttgaaatttgaaagttatacctc 2759099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 2818685 - 2818520
Alignment:
Q  1 cttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttctttt 100  Q
    |||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| ||| |||| ||||||||||||||| | ||||||||| |     
T  2818685 cttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgctcggctgcaccctccaataaccaaccatatagttcttctctc 2818586  T
Q  101 ggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccat 166  Q
    || ||||||| ||| || | ||||||||||||||| ||||||||||||||||||||||||||||||    
T  2818585 gggccttcaaatcctacgatttctgtttcttcaatgaaaagagaagacagtcgaggatcacgccat 2818520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 2838610 - 2838864
Alignment:
Q  1 cttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttctttt 100  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||| || |||||||||||| |||| ||||||||||||||| | | ||||||| ||    
T  2838610 cttggcaagagtggtttttcctagaccccccattcctaccactgatatgactgtgcgctcagctgcaccctccaataaccaaccatatatttcttctctt 2838709  T
Q  101 ggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcc------tatgctaa 194  Q
    || ||||||| ||| |||| ||||||||||||||| ||||| |||||||||||||| ||  ||||| |||||||||||  ||||||        || |      
T  2838710 gggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgttgc 2838809  T
Q  195 tgctgcttgaagttcctcgttcgtgtgaaatttgaaagttatacctctcacttct 249  Q
    |||||||||| | |||| |||| | |||||||||||||||||||||||| |||||    
T  2838810 tgctgcttgaggatccttgttcatttgaaatttgaaagttatacctctcgcttct 2838864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 2769196 - 2768946
Alignment:
Q  2 ttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttg 101  Q
    ||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||| |||| |||| ||||||||||||||| | | ||||||| |||    
T  2769196 ttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataaccaaccaaataattcttctcttg 2769097  T
Q  102 gaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttct--ctctctccta-tgctaatgct 198  Q
    | ||||| | ||| |||| |||||||||||||||||| || |||||||  ||||||||||||||| ||||| |||||  |||||  ||| || |  ||||    
T  2769096 ggccttccaatcctacaatttctgtttcttcaataaagagggaagacatccgaggatcacgccatcttccactttctgactctccactactgttcctgct 2768997  T
Q  199 gcttgaagttcctcgttcgtgtgaaatttgaaagttatacctctcacttct 249  Q
    | |||| | |||| |||| |||||| |||||||| |||||||||| |||||    
T  2768996 gtttgaggatccttgttcatgtgaagtttgaaagctatacctctcgcttct 2768946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 2797489 - 2797238
Alignment:
Q  1 cttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttctttt 100  Q
    |||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||||   || || | |||||||||||||| ||||||  |     
T  2797489 cttggcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaaccaaccagacaattcttccctc 2797390  T
Q  101 ggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttc--tctctctcct-atgctaatgc 197  Q
    || ||||||| ||| |||| | | ||||||||||||||||| ||||||||||||||||||| |||| ||| ||| ||  ||||||| ||  || |  |||    
T  2797389 gggccttcaaatccgacaattgcagtttcttcaataaaaagggaagacagtcgaggatcacaccatcttctattatccgtctctctactgctgttgttgc 2797290  T
Q  198 tgcttgaagttcctcgttcgtgtgaaatttgaaagttatacctctcacttct 249  Q
    ||||||| | |||| ||   ||||||||||||||||||||||||||||||||    
T  2797289 tgcttgatgatcctggtgtctgtgaaatttgaaagttatacctctcacttct 2797238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 2790491 - 2790244
Alignment:
Q  5 gcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttggac 104  Q
    |||||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||||   || ||||||||||||||||||| ||||||  | || |    
T  2790491 gcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaaccagacaattcttccctcgggc 2790392  T
Q  105 cttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttc--tctctctcct-atgctaatgctgct 201  Q
    |||||| ||| |||| | | ||||||||||| ||||| |||||||  ||||||||| ||||| ||| ||| ||  ||||||| ||  || |  |||||||    
T  2790391 cttcaaatccgacaattgcagtttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgctgct 2790292  T
Q  202 tgaagttcctcgttcgtgtgaaatttgaaagttatacctctcacttct 249  Q
    ||| | |||| ||   ||||||||||||||||||||||||||||||||    
T  2790291 tgatgatcctggtgtctgtgaaatttgaaagttatacctctcacttct 2790244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 22648533 - 22648590
Alignment:
Q  3 tggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc 60  Q
    |||||||||||||||||||||| |||||||| |||||||| || || || ||||||||    
T  22648533 tggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctc 22648590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21945717 - 21945673
Alignment:
Q  1 cttggcaagagtggtttttcctaggcctcccattcctaccacgga 45  Q
    |||||| ||||||||||||||| | ||||||||||||||||||||    
T  21945717 cttggctagagtggtttttccttgccctcccattcctaccacgga 21945673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 22621288 - 22621328
Alignment:
Q  2 ttggcaagagtggtttttcctaggcctcccattcctaccac 42  Q
    ||||||||||||| ||||||| | |||||||||||||||||    
T  22621288 ttggcaagagtggattttccttgtcctcccattcctaccac 22621328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 6162 - 6413
Alignment:
Q  1 cttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttctttt 100  Q
    |||||||||||||||||| ||||  ||||||||||||||||| || || || ||||||||||||  ||  ||||||||||||||| | | ||| ||| ||    
T  6162 cttggcaagagtggttttccctatacctcccattcctaccactgaaattacggtgcgctcagctggactctccaataaccaaccatataattcctctctt 6261  T
Q  101 ggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctctcctatgctaatgctg- 199  Q
    || ||||| | ||| |||||||| ||||||||||||||||| | ||| | |||||||||||||||| |||||||||||  ||||||| ||||  |||||     
T  6262 gggccttcgaatcctacaacttcagtttcttcaataaaaagggcagataatcgaggatcacgccatcttccattttctgcctctcctgtgctgctgctga 6361  T
Q  200 --cttgaagttcctcgttcgtgtgaaatttgaaagttatacctctcacttct 249  Q
      ||||| | |||  |||| ||| ||||||||||||||||||| ||||||||    
T  6362 cacttgatgatccaggttcatgtaaaatttgaaagttatacctttcacttct 6413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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