View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7987_low_5 (Length: 601)
Name: NF7987_low_5
Description: NF7987
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7987_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 319 - 590
Target Start/End: Complemental strand, 46086747 - 46086476
Alignment:
| Q |
319 |
aggtgcaaattggatctcattcctttacgtatgattatgtgtatggtagcacgggacaaccttcatctacgatttacaatgattgtgtagcaccgctcgt |
418 |
Q |
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| T |
46086747 |
aggtgcaaattggatctcattcctttacgtatgattatgtgtatggtagcacgggacaaccttcatctactatttacgatgattgtgtagcaccgctcgt |
46086648 |
T |
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| Q |
419 |
tgatgcacttttcaatggatataatgccacggttctcgcttatggtcaggtataattttcatttcttggattttttgttatgtaagccttatgattacga |
518 |
Q |
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| T |
46086647 |
tgatgcacttttcaatggatataatgccacggttctcgcttatggtcaggtataattttcatttcttggattttttgttacgtaagccttatgattgcga |
46086548 |
T |
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| Q |
519 |
aaaacttatttgagaaacttatgctatatatttattcgacgtgtgaattgtaattgagcattttcccttcat |
590 |
Q |
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| T |
46086547 |
aaaacttatttgagaaacttatgctatatatttattctacgtgtgaattgtaattgagcattttcccctcat |
46086476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 46087047 - 46086822
Alignment:
| Q |
18 |
caatccacaacttcaccagctccaaaatctatgatcaatccaatgctgcattgatttttgcattcaattcggggtttaggttttccatgttagcttgaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46087047 |
caatccacaacttcaccagctccaaaatctatgatcaatccaatgctgcattgatttttgcattcaattcggggtttaggttttccatgttagcttgaaa |
46086948 |
T |
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| Q |
118 |
tggagaacacagattccacacaaagcgtgcgagttgccgttaacattcggcctctgatcacgtccgaacttctccttggttgcacagattgcatttctgt |
217 |
Q |
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| T |
46086947 |
tggagaacacagattccacacagagcgtgcgagttgccgtcaacattcggcctctgatcacgtccgaacttctccttggttgcacagattgcatttctgt |
46086848 |
T |
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| Q |
218 |
tgttcctggcgaacctcaggtgctac |
243 |
Q |
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| T |
46086847 |
tgttcctggcgaacctcaggtgctac |
46086822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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